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YP_010771758.1

Arc-Vir

NC_074632__YP_010771758.1__QIT28-gp15__00015

Identity

Accession:
NC_074632 ↗
Protein ID:
YP_010771758.1 ↗
Kingdom:
archaea

Quality

90.9 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Rudiviridae› Hoswirudivirus› Acidianus_rod-shaped_virus_3

TaxID: 2730617

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-71
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 78.0 6.90e-01 98.3% 71.1%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 75.0 6.24e-01 100.0% 63.7%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 60.0 5.50e-01 100.0% 65.4%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.73 64.0 5.94e-01 100.0% 93.6%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.71 53.0 4.65e-01 80.0% 56.8%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 60.0 4.68e-01 100.0% 77.4%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 48.0 4.39e-01 75.0% 55.6%
5jjxA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 51.0 3.25e-01 85.0% 16.5%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 59.0 5.05e-01 100.0% 65.7%
2d2sA02 1.20.58.1220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain 0.67 56.0 4.82e-01 96.7% 73.3%
6lumG01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.67 46.0 3.82e-01 73.3% 40.2%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.67 47.0 4.54e-01 75.0% 72.1%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 55.0 4.84e-01 88.3% 82.1%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 48.0 4.81e-01 83.3% 75.8%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 43.0 4.36e-01 93.3% 67.2%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.97e-01 100.0% 78.8%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.65 45.0 4.35e-01 86.7% 64.2%
2ooeA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 53.0 3.76e-01 91.7% 44.2%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 48.0 4.92e-01 81.7% 82.8%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.64 49.0 4.44e-01 88.3% 78.7%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.64 56.0 4.01e-01 98.3% 91.9%
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.63 52.0 4.36e-01 96.7% 88.3%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 53.0 4.24e-01 98.3% 47.9%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.62 42.0 3.60e-01 70.0% 44.3%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 44.0 4.06e-01 75.0% 60.8%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.62 45.0 4.91e-01 76.7% 98.0%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 47.0 4.63e-01 81.7% 81.0%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.61 50.0 4.51e-01 98.3% 82.6%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.61 50.0 3.88e-01 91.7% 60.1%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 46.0 4.11e-01 83.3% 57.8%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 51.0 3.65e-01 100.0% 40.9%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 48.0 4.68e-01 88.3% 91.0%
2bnxB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 50.0 3.42e-01 96.7% 47.5%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 46.0 4.66e-01 88.3% 86.2%
5tqbB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 49.0 3.16e-01 98.3% 29.8%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 44.0 4.40e-01 81.7% 79.7%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 44.0 4.27e-01 83.3% 73.1%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 39.0 3.14e-01 71.7% 66.9%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.57 43.0 3.75e-01 81.7% 54.7%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 44.0 4.17e-01 88.3% 90.5%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 47.0 4.04e-01 98.3% 70.5%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 40.0 4.05e-01 83.3% 75.4%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.53 41.0 3.62e-01 96.7% 54.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3287859 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.87 61.0 4.82e-01 73.3% 45.2%
3332055 2007.9.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.87 61.0 4.15e-01 73.3% 23.2%
3599567 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.83 59.0 5.15e-01 75.0% 51.8%
3615313 1128.1.1.2 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.81 57.0 5.15e-01 73.3% 55.0%
3944885 101.1.1.355 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF2857 0.81 64.0 6.28e-01 96.7% 78.5%
3219209 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 66.0 6.28e-01 100.0% 80.0%
3563871 603.1.1.121 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30821 0.77 69.0 5.54e-01 100.0% 79.1%
4000626 5043.1.1.11 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › ATP_synt_H 0.73 52.0 4.72e-01 75.0% 62.5%
171404 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.73 64.0 5.94e-01 100.0% 93.6%
3402082 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.13e-01 100.0% 56.0%
3865528 101.35.1.8 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF4560 0.72 61.0 6.12e-01 98.3% 95.0%
3838401 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.72 67.0 5.53e-01 100.0% 74.0%
3688345 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.71 54.0 4.39e-01 85.0% 44.5%
3589591 601.32.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › FusB family N-terminal domain › FusB family N-terminal domain › EF-G-binding_N 0.70 60.0 5.53e-01 98.3% 82.5%
4605910 101.1.1.213 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H 0.70 59.0 5.30e-01 100.0% 66.7%
4094168 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.69 49.0 4.17e-01 75.0% 46.0%
4588424 3226.1.1.2 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp 0.69 60.0 3.61e-01 100.0% 48.5%
3266463 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 54.0 5.55e-01 100.0% 100.0%
3987802 192.7.1.1 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.66 49.0 4.92e-01 83.3% 78.3%
4674 192.7.1.1 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.66 48.0 4.73e-01 83.3% 72.3%
4329615 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.66 48.0 4.56e-01 81.7% 65.7%
3598036 601.14.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.66 48.0 3.68e-01 81.7% 33.1%
3484950 605.8.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like 0.66 44.0 4.96e-01 81.7% 93.3%
5074875 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.65 55.0 4.89e-01 98.3% 87.8%
3588172 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.65 46.0 3.45e-01 75.0% 80.0%
4031046 192.7.1.1 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.65 47.0 4.80e-01 81.7% 78.3%
3462297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.40e-01 88.3% 62.7%
3775580 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.64 46.0 4.28e-01 88.3% 61.3%
3650360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 56.0 4.48e-01 100.0% 50.0%
3420477 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 56.0 4.38e-01 100.0% 49.2%
3739646 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.63 48.0 3.09e-01 85.0% 20.0%
3666433 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 55.0 4.36e-01 100.0% 51.2%
393778 192.18.1.1 ↗ alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like › T3SS_needle_F 0.62 41.0 4.08e-01 75.0% 65.1%
3202914 3846.1.1.0 ↗ alpha bundles › IcmR › IcmR › IcmR 0.62 43.0 4.34e-01 71.7% 73.3%
4992012 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 51.0 5.14e-01 100.0% 95.0%
3402081 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 50.0 4.51e-01 100.0% 68.9%
3942324 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 50.0 4.84e-01 98.3% 87.1%
4358621 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.58 47.0 4.38e-01 91.7% 75.9%
1760269 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.58 46.0 3.82e-01 90.0% 79.3%
4017461 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.58 50.0 4.28e-01 100.0% 65.0%
3782994 109.4.1.1161 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MEC1_N 0.58 46.0 3.05e-01 91.7% 19.0%
3871543 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 48.0 3.81e-01 96.7% 69.2%
3593497 109.4.1.201 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14,TPR_19 0.57 47.0 3.02e-01 96.7% 18.1%
4955389 101.1.1.542 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.56 44.0 4.61e-01 100.0% 98.2%
3609780 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 3.31e-01 95.0% 47.7%
3028309 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.55 47.0 4.20e-01 98.3% 83.0%
3394736 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 46.0 3.88e-01 100.0% 72.7%
4029298 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 44.0 2.98e-01 98.3% 31.5%