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YP_010771921.1

Arc-Vir

NC_074636__YP_010771921.1__QIT33-gp21__00021

Identity

Accession:
NC_074636 ↗
Protein ID:
YP_010771921.1 ↗
Kingdom:
archaea

Quality

54.7 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Maximonvirales› Ahmunviridae› Yumkaaxvirus› Methanophagales_virus_PBV300

TaxID: 2987731

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 568-703
PDB
D2 medium residues 759-836
PDB
D3 medium residues 837-989
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.52 38.0 3.89e-01 79.7% 77.5%
D4 medium residues 1269-1373
PDB
D5 medium residues 1379-1501
PDB
Domain cluster: rep: IMGVR_UViG_3300005856_000098-3300005856-Ga0080005_1295621__D107-208
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kwaB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 50.0 4.37e-01 97.6% 73.4%
3on4D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 45.0 3.95e-01 86.2% 76.2%
7y3eA01 1.20.1530.20 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › 0.55 39.0 2.79e-01 79.7% 21.6%
1m56C02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.54 41.0 3.56e-01 80.5% 61.2%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.53 37.0 3.89e-01 82.1% 78.8%
2ibdA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 39.0 3.73e-01 78.0% 65.3%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 42.0 3.81e-01 87.8% 85.1%
4akgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.52 37.0 3.32e-01 87.0% 53.0%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 37.0 3.54e-01 80.5% 61.7%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 40.0 4.11e-01 87.0% 98.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3368155 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.65 54.0 4.26e-01 90.2% 90.6%
3394944 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.64 50.0 3.92e-01 84.6% 92.4%
3308070 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.64 52.0 4.09e-01 89.4% 91.1%
3854358 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.63 51.0 3.96e-01 87.8% 87.4%
3408320 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.63 51.0 4.06e-01 88.6% 89.1%
None — 0.59 52.0 3.44e-01 98.4% 44.1%
3957035 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.59 48.0 3.83e-01 88.6% 92.8%
3638386 603.1.1.111 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TBCC_N 0.58 42.0 4.51e-01 89.4% 89.5%
3630257 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.58 43.0 3.82e-01 78.9% 97.8%
3660884 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 33.0 3.47e-01 79.7% 64.3%
4365191 141.1.1.2 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › SQS_PSY 0.53 45.0 3.24e-01 95.1% 58.7%
3814534 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.52 38.0 3.60e-01 94.3% 63.1%
3815499 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.52 35.0 3.37e-01 87.8% 59.3%
3479092 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 39.0 4.23e-01 88.6% 98.0%
3653783 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.51 39.0 3.68e-01 98.4% 65.2%
3580280 604.1.1.192 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26998 0.50 37.0 4.07e-01 84.6% 100.0%
3169342 109.4.1.381 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rrn11 0.50 44.0 3.61e-01 95.9% 55.1%
3423128 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.50 38.0 3.58e-01 95.1% 65.3%