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YP_010771932.1

Arc-Vir

NC_074636__YP_010771932.1__QIT33-gp32__00032

Identity

Accession:: NC_074636 ↗
Protein ID:: YP_010771932.1 ↗
Kingdom:: archaea

Quality

89.4 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Maximonvirales› Ahmunviridae› Yumkaaxvirus› Methanophagales_virus_PBV300

TaxID: 2987731

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-148

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5jk0B01	1.10.443.10	Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core	0.56	40.0	3.54e-01	73.6%	56.1%
3h0lA00	3.90.1300.10	Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain	0.53	42.0	2.90e-01	86.8%	70.9%
5tdeA01	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.53	41.0	3.85e-01	81.8%	81.9%
3j7aF03	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.53	28.0	3.56e-01	72.7%	85.9%
4qxaB00	2.30.29.230	Mainly Beta › Roll › PH-domain like ›	0.53	38.0	3.58e-01	74.4%	98.0%
2czoA00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.52	36.0	3.55e-01	70.2%	90.0%
1ykdB02	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.52	41.0	3.61e-01	86.8%	95.7%
6j8yA00	3.70.10.10	Alpha Beta › Box › Proliferating Cell Nuclear Antigen ›	0.51	41.0	3.30e-01	89.3%	47.5%
2dc0A00	3.90.1300.10	Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain	0.50	41.0	2.88e-01	90.1%	71.0%
4gxbA03	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.50	33.0	3.53e-01	73.6%	76.9%
1vq0A01	3.55.30.10	Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain	0.50	40.0	3.22e-01	84.3%	73.0%
1ut7B01	2.170.150.80	Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain	0.50	33.0	3.27e-01	84.3%	62.4%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3942738	295.1.1.29 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ	0.72	35.0	3.22e-01	84.3%	35.5%
3941411	223.1.1.3 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › GAF	0.60	43.0	3.80e-01	72.7%	72.4%
3286934	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.59	42.0	3.60e-01	71.9%	67.0%
3284762	4090.1.1.0 ↗	a+b two layers › BH3703-like › BH3703-like › BH3703-like	0.58	45.0	4.25e-01	82.6%	70.3%
3285626	4090.1.1.0 ↗	a+b two layers › BH3703-like › BH3703-like › BH3703-like	0.57	45.0	4.20e-01	85.1%	66.5%
3279119	4090.1.1.0 ↗	a+b two layers › BH3703-like › BH3703-like › BH3703-like	0.56	44.0	4.29e-01	87.6%	76.3%
5052185	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.56	42.0	4.11e-01	78.5%	86.9%
3290151	4090.1.1.0 ↗	a+b two layers › BH3703-like › BH3703-like › BH3703-like	0.54	41.0	4.11e-01	82.6%	79.2%
5011758	7552.1.1.1 ↗	a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase	0.53	42.0	2.90e-01	86.0%	69.1%
3962048	227.1.1.15 ↗	a+b two layers › DNA clamp › DNA clamp › DNA clamp › PF26035	0.53	40.0	4.38e-01	88.4%	99.0%
5000153	304.107.1.0 ↗	a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain	0.51	28.0	3.26e-01	82.6%	75.9%
2440701	1.1.11.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain	0.51	37.0	3.65e-01	76.0%	93.9%