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YP_010771961.1
Arc-VirNC_074637__YP_010771961.1__QIT34-gp10__00010
Identity
- Accession:
- NC_074637 ↗
- Protein ID:
- YP_010771961.1 ↗
- Kingdom:
- archaea
Quality
65.5
mean pLDDT
Taxonomy
Zilligvirae›
Taleaviricota›
Tokiviricetes›
Primavirales›
Tristromaviridae›
Alphatristromavirus›
Pyrobaculum_filamentous_virus_2
TaxID: 2730621
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-90_175-214
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.65 | 41.0 | 3.66e-01 | 72.0% | 45.7% |
| 8oqkA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 41.0 | 4.01e-01 | 72.0% | 58.3% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.61 | 51.0 | 4.87e-01 | 92.5% | 93.6% |
| 4rweA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 37.0 | 3.18e-01 | 95.7% | 37.7% |
| 1w9cA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 48.0 | 3.37e-01 | 93.5% | 32.1% |
| 3tmaA01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.58 | 38.0 | 3.21e-01 | 71.0% | 40.0% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.58 | 41.0 | 4.20e-01 | 90.3% | 78.4% |
| 1aj3A00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 42.0 | 4.20e-01 | 81.7% | 73.5% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.56 | 33.0 | 3.30e-01 | 92.5% | 55.7% |
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.56 | 47.0 | 3.98e-01 | 92.5% | 100.0% |
| 1ya0A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 49.0 | 3.86e-01 | 100.0% | 66.5% |
| 1gu9C00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.55 | 42.0 | 3.51e-01 | 81.7% | 50.0% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.55 | 38.0 | 3.61e-01 | 72.0% | 75.2% |
| 3pjaJ01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.55 | 46.0 | 4.14e-01 | 91.4% | 70.2% |
| 4xpwA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.55 | 42.0 | 3.77e-01 | 81.7% | 67.2% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 40.0 | 4.23e-01 | 80.6% | 88.9% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 40.0 | 3.54e-01 | 82.8% | 78.3% |
| 4aidA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.52 | 30.0 | 3.23e-01 | 93.5% | 65.9% |
| 2wauA02 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 44.0 | 4.06e-01 | 94.6% | 78.7% |
| 7ztbB01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 44.0 | 3.64e-01 | 93.5% | 56.4% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 41.0 | 3.84e-01 | 88.2% | 71.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4964669 | 2484.1.1.341 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Salactin | 0.65 | 59.0 | 4.66e-01 | 100.0% | 61.6% |
| 978082 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.65 | 50.0 | 3.29e-01 | 81.7% | 70.0% |
| 4972927 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.64 | 50.0 | 3.41e-01 | 86.0% | 30.9% |
| 3251611 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 45.0 | 3.38e-01 | 76.3% | 75.5% |
| 5078126 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.61 | 50.0 | 4.29e-01 | 91.4% | 89.0% |
| 4972115 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.61 | 46.0 | 3.35e-01 | 81.7% | 56.4% |
| 5046162 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.59 | 48.0 | 3.92e-01 | 89.2% | 75.0% |
| 4240104 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.59 | 44.0 | 3.85e-01 | 80.6% | 92.4% |
| 4993915 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.58 | 48.0 | 4.07e-01 | 93.5% | 54.2% |
| 3411141 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 40.0 | 3.91e-01 | 72.0% | 90.5% |
| 3217462 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 42.0 | 4.08e-01 | 79.6% | 72.0% |
| 5028674 | 129.1.1.5 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Ferric_reduct | 0.56 | 42.0 | 3.22e-01 | 80.6% | 64.9% |
| 4002096 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 48.0 | 3.38e-01 | 95.7% | 84.7% |
| 4926877 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 50.0 | 3.70e-01 | 100.0% | 48.5% |
| 4010998 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.54 | 43.0 | 3.45e-01 | 82.8% | 50.9% |
| None | — | 0.52 | 40.0 | 2.77e-01 | 81.7% | 87.7% | |
| 4970859 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.50 | 33.0 | 3.22e-01 | 72.0% | 61.0% |
| 3639609 | 5054.1.1.17 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8 | 0.50 | 43.0 | 3.08e-01 | 94.6% | 79.6% |
| 3955621 | 603.5.1.33 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like › SLAC1 | 0.50 | 41.0 | 3.50e-01 | 90.3% | 71.0% |
D2
medium
residues 91-174