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YP_010771974.1

Arc-Vir

NC_074637__YP_010771974.1__QIT34-gp23__00023

Identity

Accession:
NC_074637 ↗
Protein ID:
YP_010771974.1 ↗
Kingdom:
archaea

Quality

86.0 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Primavirales› Tristromaviridae› Alphatristromavirus› Pyrobaculum_filamentous_virus_2

TaxID: 2730621

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-228
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25658.2 best FV_peptidase 331.1 3.40e-99 100.0% 91.3%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 34.0 4.85e-01 91.9% 97.8%
1mfnA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 27.0 3.62e-01 89.8% 77.4%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 25.0 3.84e-01 84.4% 100.0%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.58 31.0 4.15e-01 85.5% 100.0%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 27.0 3.71e-01 93.5% 90.2%
1tdqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 26.0 3.48e-01 90.9% 81.9%
4hd5A01 2.60.40.3760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 27.0 3.51e-01 89.8% 82.5%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 32.0 3.61e-01 90.3% 73.9%
3b83C00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 25.0 3.25e-01 90.3% 75.8%
2ekjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 26.0 3.33e-01 91.4% 77.1%
2dm4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 26.0 3.41e-01 93.5% 84.0%
1x5xA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 27.0 3.38e-01 91.9% 78.0%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 26.0 3.31e-01 89.8% 78.1%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.53 21.0 3.18e-01 73.1% 93.9%
5mybA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 24.0 3.20e-01 90.3% 79.2%
2e1qC01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.52 25.0 3.48e-01 99.5% 92.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3723839 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 27.0 3.43e-01 75.3% 65.5%
4119987 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 46.0 4.37e-01 98.9% 67.6%
4136251 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 32.0 4.16e-01 81.2% 95.2%
3972868 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 31.0 4.08e-01 90.3% 95.0%
4028467 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.58 46.0 4.03e-01 99.5% 56.4%
4505817 11.1.1.165 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ATG19 0.57 28.0 3.28e-01 75.8% 62.2%
4591842 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 27.0 3.38e-01 75.8% 74.3%
3904480 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 27.0 2.99e-01 91.9% 54.2%
3231574 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 25.0 3.21e-01 91.4% 73.0%
5062408 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 25.0 3.57e-01 89.8% 95.0%
3232277 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 26.0 3.08e-01 90.9% 63.3%
3886825 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 24.0 3.24e-01 89.8% 80.0%
3915482 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 26.0 3.34e-01 75.3% 80.0%
5044312 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 26.0 3.37e-01 90.3% 82.0%
3878607 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 25.0 3.30e-01 89.8% 81.1%
2407461 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.53 33.0 3.83e-01 94.6% 84.7%
3542951 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 24.0 3.20e-01 89.8% 80.0%
3231575 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 24.0 2.96e-01 74.2% 67.3%
3268665 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 27.0 3.25e-01 89.8% 76.7%