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YP_010772006.1

Arc-Vir

NC_074638__YP_010772006.1__QIT35-gp16__00016

Identity

Accession:
NC_074638 ↗
Protein ID:
YP_010772006.1 ↗
Kingdom:
archaea

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 81-220_249-270
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13597.12 best NRDD 114.2 1.00e-32 89.5% 22.5%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b8bA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.77 75.0 4.97e-01 100.0% 36.0%
7swlB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 39.0 3.94e-01 97.5% 60.7%
6hqvA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 43.0 4.29e-01 100.0% 74.0%
4cczA01 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.55 49.0 4.03e-01 100.0% 76.8%
1oheA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 33.0 3.46e-01 73.5% 63.8%
3abzA01 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.54 49.0 3.87e-01 100.0% 55.6%
3mesA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.54 45.0 3.82e-01 93.2% 96.2%
6xigA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 48.0 3.92e-01 100.0% 78.9%
8idpB01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 47.0 3.68e-01 100.0% 79.9%
2g3mA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 46.0 3.54e-01 100.0% 67.3%
3mkkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 46.0 3.52e-01 100.0% 70.0%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.51 33.0 3.37e-01 82.7% 65.8%
1f05A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 45.0 3.66e-01 100.0% 76.7%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934728 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.96 94.0 6.07e-01 100.0% 31.9%
5001541 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.94 91.0 5.85e-01 100.0% 31.1%
5031517 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.94 91.0 5.95e-01 100.0% 34.2%
4982642 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.94 92.0 5.99e-01 100.0% 33.3%
4961008 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.93 90.0 5.80e-01 100.0% 32.2%
4949117 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.93 90.0 6.20e-01 100.0% 46.7%
5004456 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.92 90.0 5.69e-01 100.0% 32.6%
4954935 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.92 89.0 5.72e-01 100.0% 31.9%
5057094 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.92 89.0 5.92e-01 100.0% 76.1%
5037353 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.92 89.0 5.75e-01 100.0% 32.2%
4942624 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.92 65.0 4.64e-01 72.2% 97.8%
4976938 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.92 89.0 5.70e-01 100.0% 31.3%
5079907 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.91 88.0 5.74e-01 100.0% 32.5%
4974476 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.91 88.0 5.63e-01 100.0% 33.0%
5048774 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.91 88.0 5.73e-01 100.0% 32.4%
5012376 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.91 88.0 5.74e-01 100.0% 32.3%
5053026 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.90 87.0 5.86e-01 100.0% 37.5%
5065401 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.90 87.0 5.54e-01 100.0% 33.9%
3603295 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.89 86.0 5.66e-01 100.0% 32.9%
5074578 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.89 86.0 5.60e-01 100.0% 32.4%
5031462 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.89 86.0 5.78e-01 100.0% 40.0%
4970624 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.87 83.0 5.52e-01 100.0% 33.5%
4987959 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.85 81.0 5.49e-01 100.0% 82.7%
1347962 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.84 80.0 6.16e-01 100.0% 59.0%
5044308 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.83 81.0 5.23e-01 100.0% 29.4%
4994565 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.82 78.0 5.48e-01 99.4% 82.6%
4895340 2500.1.1.7 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD 0.78 75.0 5.06e-01 100.0% 37.5%
3949156 2500.1.1.7 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD 0.78 75.0 4.84e-01 100.0% 31.5%
4895332 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.78 75.0 5.04e-01 100.0% 37.9%
3978395 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.78 75.0 4.83e-01 100.0% 31.5%
3100301 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.77 74.0 4.74e-01 100.0% 33.3%
5027411 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.68 64.0 4.29e-01 100.0% 72.3%
4996622 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.62 42.0 3.94e-01 99.4% 55.9%
3609496 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.61 40.0 4.22e-01 97.5% 71.3%
3275379 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.61 42.0 3.94e-01 99.4% 56.9%
3646673 2002.1.1.57 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D 0.57 42.0 4.05e-01 86.4% 65.3%
4640238 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.56 40.0 4.44e-01 91.4% 94.4%
3514481 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 47.0 4.47e-01 100.0% 77.9%
3227327 2007.5.1.1 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.55 49.0 3.89e-01 99.4% 79.7%
4956047 2002.1.1.74 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 0.53 47.0 3.90e-01 100.0% 97.7%
3570896 2007.5.1.21 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C 0.52 48.0 4.05e-01 100.0% 65.7%
4994819 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.50 46.0 3.97e-01 100.0% 70.7%
D2 high residues 289-381_555-612
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 70.0 7.29e-01 100.0% 92.2%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 71.0 7.37e-01 100.0% 93.6%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.81 78.0 7.42e-01 100.0% 95.9%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 66.0 6.88e-01 100.0% 92.8%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 76.0 7.29e-01 100.0% 95.9%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 75.0 7.23e-01 100.0% 95.9%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 74.0 6.99e-01 100.0% 96.0%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 67.0 6.98e-01 100.0% 96.5%
1am2A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 74.0 6.87e-01 100.0% 95.6%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.77 74.0 7.05e-01 100.0% 92.9%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.76 65.0 6.67e-01 100.0% 93.8%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.75 71.0 6.56e-01 100.0% 96.2%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.75 71.0 6.81e-01 100.0% 95.8%
1zdeA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.74 66.0 6.50e-01 100.0% 88.7%
ECOD (96)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994372 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 67.0 7.47e-01 99.3% 95.8%
2553113 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 68.0 7.38e-01 100.0% 92.2%
4993732 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 64.0 6.98e-01 100.0% 91.2%
3604113 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.85 75.0 7.69e-01 100.0% 94.5%
5029355 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.85 78.0 7.91e-01 100.0% 96.0%
3282306 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 70.0 7.39e-01 100.0% 94.8%
4930925 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.85 71.0 7.41e-01 100.0% 93.6%
3952464 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.84 70.0 7.15e-01 100.0% 89.0%
2636473 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 71.0 7.28e-01 100.0% 91.0%
2445477 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 71.0 7.08e-01 100.0% 85.7%
4993808 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 74.0 7.60e-01 100.0% 95.2%
4457379 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 68.0 7.00e-01 100.0% 88.3%
5066389 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 79.0 7.19e-01 100.0% 94.2%
4933756 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 70.0 7.33e-01 100.0% 95.7%
5031914 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 79.0 7.28e-01 100.0% 91.9%
5030213 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 70.0 7.07e-01 100.0% 88.7%
5029854 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 78.0 6.86e-01 100.0% 93.3%
4943244 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 78.0 7.41e-01 100.0% 95.9%
4405940 242.1.1.8 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3, Intein_splicing 0.81 75.0 5.18e-01 99.3% 62.8%
4945569 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 72.0 7.21e-01 100.0% 91.6%
5031634 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 74.0 7.25e-01 100.0% 90.6%
3603108 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 69.0 7.03e-01 100.0% 92.4%
3603738 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 69.0 7.16e-01 99.3% 96.4%
4977673 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 76.0 6.51e-01 100.0% 96.4%
4039971 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 76.0 7.20e-01 100.0% 94.3%
5030499 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 71.0 7.21e-01 99.3% 94.0%
4997601 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 69.0 7.22e-01 100.0% 97.9%
4993581 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 76.0 7.26e-01 100.0% 92.4%
4152516 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 66.0 6.97e-01 100.0% 97.0%
5012699 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 76.0 7.24e-01 100.0% 96.5%
5013937 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 75.0 7.31e-01 100.0% 93.3%
4999902 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 69.0 7.07e-01 100.0% 95.2%
4322985 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.79 64.0 4.69e-01 100.0% 35.8%
4930433 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 72.0 7.14e-01 100.0% 93.5%
4979631 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 72.0 7.24e-01 100.0% 95.3%
4993454 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 74.0 6.27e-01 100.0% 94.5%
5014854 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 75.0 6.51e-01 100.0% 94.4%
2524072 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 75.0 7.15e-01 100.0% 94.7%
5030847 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 70.0 6.89e-01 100.0% 88.7%
4993853 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 75.0 7.23e-01 100.0% 95.8%
4992473 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 73.0 6.99e-01 100.0% 87.6%
4997604 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 74.0 7.11e-01 100.0% 91.8%
4997597 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 68.0 6.92e-01 100.0% 92.7%
4971400 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 74.0 5.69e-01 100.0% 50.5%
4975578 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 73.0 5.82e-01 100.0% 54.2%
4315406 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.77 73.0 6.86e-01 100.0% 96.1%
4565870 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 69.0 6.88e-01 100.0% 91.0%
4544734 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.77 74.0 6.46e-01 100.0% 97.1%
4992651 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 74.0 7.20e-01 100.0% 92.1%
4388671 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 73.0 6.83e-01 100.0% 96.1%
5013038 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 74.0 7.22e-01 100.0% 93.8%
5052154 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 74.0 7.17e-01 100.0% 95.2%
4586920 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 72.0 7.12e-01 100.0% 94.8%
4993871 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 57.0 6.49e-01 81.5% 99.1%
4971412 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 73.0 6.83e-01 99.3% 97.2%
5002632 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 68.0 6.88e-01 100.0% 94.0%
5012957 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.77 73.0 6.92e-01 100.0% 94.9%
4487998 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.77 66.0 6.26e-01 100.0% 77.7%
4600944 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 66.0 6.26e-01 100.0% 77.7%
4975503 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 73.0 6.82e-01 100.0% 95.6%
4170121 69.1.1.11 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT, Intein_splicing 0.76 73.0 6.96e-01 100.0% 95.3%
4070999 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.76 66.0 6.55e-01 100.0% 87.7%
4946209 69.1.1.18 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › DNA_topoisoIV 0.76 72.0 6.42e-01 100.0% 96.6%
5032319 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 68.0 6.89e-01 100.0% 94.7%
4978263 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 73.0 7.04e-01 100.0% 92.1%
4932851 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.76 60.0 6.36e-01 100.0% 92.6%
5029540 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.76 73.0 7.14e-01 100.0% 95.6%
4993813 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 73.0 7.14e-01 100.0% 94.4%
5022295 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 72.0 6.99e-01 100.0% 93.9%
4940943 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.75 71.0 6.83e-01 100.0% 93.5%
3511246 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.75 67.0 6.47e-01 100.0% 84.8%
4983616 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 71.0 6.80e-01 100.0% 94.7%
4934481 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 66.0 6.73e-01 100.0% 95.3%
2701967 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 61.0 6.41e-01 100.0% 94.2%
4993437 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 67.0 6.88e-01 95.4% 97.9%
4983458 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.74 71.0 6.87e-01 100.0% 95.2%
5023539 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 71.0 7.04e-01 100.0% 96.8%
4998392 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.74 70.0 6.84e-01 100.0% 95.2%
4948019 69.1.1.17 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › MCM 0.74 70.0 6.62e-01 100.0% 92.6%
4993927 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 70.0 7.11e-01 99.3% 100.0%
4127166 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 67.0 6.74e-01 100.0% 95.3%
3215378 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.73 66.0 6.65e-01 100.0% 94.7%
5065032 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.73 70.0 6.74e-01 100.0% 95.8%
3230518 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.73 67.0 6.66e-01 100.0% 93.5%
4291841 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 70.0 6.74e-01 100.0% 97.0%
4993480 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 70.0 6.83e-01 100.0% 94.4%
4998394 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.72 67.0 6.65e-01 97.4% 96.8%
5028299 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.72 66.0 6.62e-01 100.0% 94.8%
4940699 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.72 67.0 6.71e-01 100.0% 96.1%
3234017 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.71 66.0 6.29e-01 100.0% 85.5%
2323756 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.71 67.0 6.59e-01 100.0% 96.2%
3026658 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.70 67.0 6.58e-01 100.0% 95.6%
4680886 69.1.1.14 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2 0.70 66.0 6.44e-01 100.0% 94.5%
4984220 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.70 66.0 6.53e-01 100.0% 96.8%
4404140 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.69 65.0 6.16e-01 100.0% 92.0%
4416649 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.68 57.0 5.87e-01 100.0% 91.0%
D3 high residues 390-551
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.87 83.0 7.80e-01 100.0% 84.6%
1ef0B02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.83 71.0 6.68e-01 100.0% 76.6%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.78 75.0 6.80e-01 100.0% 81.6%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.77 42.0 5.75e-01 73.5% 100.0%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.76 66.0 6.22e-01 100.0% 77.5%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.67 28.0 4.26e-01 93.2% 90.4%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.63 33.0 4.37e-01 93.2% 92.2%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 29.0 3.46e-01 95.1% 72.2%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 35.0 4.14e-01 100.0% 98.1%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 32.0 3.81e-01 80.9% 89.5%
4binA01 2.60.40.3500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 32.0 3.72e-01 71.0% 85.3%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 29.0 3.75e-01 80.9% 100.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 30.0 3.51e-01 81.5% 83.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4996524 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.87 81.0 7.48e-01 100.0% 79.5%
4669669 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.86 42.0 5.12e-01 99.4% 70.9%
3602220 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.80 42.0 5.88e-01 76.5% 100.0%
4943292 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.79 44.0 5.95e-01 74.1% 100.0%
5075143 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.78 74.0 6.75e-01 100.0% 80.5%
4566109 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.76 44.0 5.67e-01 76.5% 96.8%
3290652 306.2.1.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.68 38.0 4.98e-01 71.6% 98.9%
4360331 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.67 26.0 3.76e-01 94.4% 76.0%
3251044 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.63 47.0 4.89e-01 77.2% 83.1%
327528 328.1.1.2 a+b two layers › IF3-like › AlbA-like › AlbA-like › SpoVS 0.63 33.0 4.37e-01 93.2% 92.2%
4937497 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.60 28.0 3.87e-01 90.1% 88.7%
4945934 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 38.0 4.45e-01 95.7% 93.0%
347023 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.50 42.0 4.06e-01 97.5% 78.5%
D4 medium residues 61-80_626-835
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13597.12 best NRDD 147.5 8.40e-43 91.3% 36.7%
D5 medium residues 221-248_836-931
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13597.12 best NRDD 86.6 2.30e-24 71.0% 15.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982642 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.96 81.0 5.05e-01 87.1% 68.3%
4934728 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.95 83.0 5.09e-01 89.5% 63.5%
5001541 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.95 80.0 4.90e-01 87.1% 64.7%
5044308 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.91 79.0 4.89e-01 90.3% 65.4%
4974476 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.91 79.0 4.79e-01 89.5% 65.4%
4976938 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.90 83.0 5.08e-01 96.0% 65.3%
5012376 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.90 79.0 4.91e-01 91.1% 63.4%
5048774 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.89 75.0 4.64e-01 87.1% 63.9%
5004456 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.89 80.0 4.88e-01 94.4% 64.8%
5037353 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.89 76.0 4.72e-01 89.5% 64.5%
5079907 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.88 76.0 4.73e-01 91.1% 64.3%
5031517 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.86 73.0 4.61e-01 89.5% 65.8%
5057094 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.85 74.0 4.68e-01 91.1% 61.9%
5027411 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.68 57.0 3.65e-01 89.5% 70.7%