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YP_010772013.1

Arc-Vir

NC_074638__YP_010772013.1__QIT35-gp23__00023

Identity

Accession:: NC_074638 ↗
Protein ID:: YP_010772013.1 ↗
Kingdom:: archaea

Quality

86.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ahpuchviridae› Kisinvirus› Methanophagales_virus_PBV299

TaxID: 2987730

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-109

PDB

Domain cluster: rep: IMGVR_UViG_648028040_000001-648028040-648194437__D21-88

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kluA01	3.30.2220.30	Alpha Beta › 2-Layer Sandwich › rbstp2171 ›	0.80	61.0	5.75e-01	80.6%	89.1%
6wlvB01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	38.0	2.86e-01	96.8%	24.6%
2ve3B00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.58	50.0	3.33e-01	100.0%	42.2%
3t8vA05	1.25.50.10	Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain	0.57	31.0	2.12e-01	89.2%	13.6%
3m8jA00	1.10.10.2690	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.56	35.0	3.61e-01	94.6%	63.3%
2lycA00	1.10.10.1890	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like	0.56	40.0	3.65e-01	76.3%	90.8%
1o7dC01	1.20.1270.50	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain	0.56	31.0	3.58e-01	89.2%	78.7%
2a73B01	1.20.91.20	Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system)	0.56	36.0	3.94e-01	90.3%	85.7%
3rkgA02	1.20.58.340	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region	0.55	38.0	3.13e-01	73.1%	40.2%
1fs0G02	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.52	35.0	3.61e-01	91.4%	71.9%
3feuA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.51	42.0	3.37e-01	89.2%	69.4%
2bnlC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	38.0	3.41e-01	93.5%	56.0%
4qozC00	1.10.8.1120	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Histone RNA hairpin-binding protein RNA-binding domain	0.50	27.0	3.06e-01	76.3%	67.1%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
119441	3103.1.1.1 ↗	alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_5	0.80	61.0	5.58e-01	80.6%	82.4%
4838669	529.1.1.1 ↗	few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › ANATO	0.57	37.0	4.06e-01	90.3%	83.3%
3467313	206.1.1.26 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Act-Frag_cataly	0.57	50.0	3.40e-01	100.0%	43.6%
4469533	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.57	45.0	3.35e-01	88.2%	36.2%
5017736	3625.1.1.0 ↗	alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain	0.54	42.0	4.08e-01	82.8%	74.3%
3040883	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.53	37.0	3.46e-01	88.2%	57.8%
4018806	3718.1.1.0 ↗	alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT	0.52	41.0	4.07e-01	83.9%	92.6%