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YP_010772021.1
Arc-VirNC_074638__YP_010772021.1__QIT35-gp31__00031
Identity
- Accession:
- NC_074638 ↗
- Protein ID:
- YP_010772021.1 ↗
- Kingdom:
- archaea
Quality
84.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Nakonvirales›
Ahpuchviridae›
Kisinvirus›
Methanophagales_virus_PBV299
TaxID: 2987730
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-114
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lrzA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 42.0 | 3.66e-01 | 73.4% | 43.4% |
| 3n4dA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.65 | 47.0 | 4.04e-01 | 75.5% | 56.9% |
| 4p4mA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.64 | 44.0 | 4.17e-01 | 71.3% | 81.7% |
| 2ihmB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.64 | 45.0 | 4.19e-01 | 72.3% | 80.7% |
| 1u9dA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.63 | 49.0 | 4.48e-01 | 81.9% | 87.7% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 43.0 | 4.34e-01 | 75.5% | 69.5% |
| 3dnsA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 46.0 | 4.11e-01 | 77.7% | 64.9% |
| 1euvA02 | 3.30.310.130 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related | 0.62 | 39.0 | 3.81e-01 | 74.5% | 57.1% |
| 1vw5B00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.62 | 44.0 | 4.20e-01 | 75.5% | 64.6% |
| 3pbkA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.61 | 44.0 | 4.24e-01 | 79.8% | 65.7% |
| 2os5A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.61 | 44.0 | 4.07e-01 | 75.5% | 65.3% |
| 5hy0A01 | 3.30.1330.170 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A | 0.60 | 43.0 | 4.14e-01 | 74.5% | 85.2% |
| 2xczA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.60 | 44.0 | 4.11e-01 | 76.6% | 67.5% |
| 5hweA01 | 3.30.1330.170 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A | 0.60 | 42.0 | 4.09e-01 | 73.4% | 86.0% |
| 4tpsD00 | 3.30.300.180 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain | 0.60 | 38.0 | 3.98e-01 | 75.5% | 71.4% |
| 4dh4A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.59 | 43.0 | 4.05e-01 | 76.6% | 67.5% |
| 4r0mA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.58 | 43.0 | 4.12e-01 | 77.7% | 70.4% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.58 | 40.0 | 4.00e-01 | 71.3% | 70.2% |
| 1cgqA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.58 | 42.0 | 3.96e-01 | 76.6% | 67.0% |
| 3laxA00 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.58 | 42.0 | 4.07e-01 | 78.7% | 67.9% |
| 3c6vA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.57 | 46.0 | 3.99e-01 | 87.2% | 88.8% |
| 2plrA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 39.0 | 3.01e-01 | 70.2% | 89.6% |
| 2wp0D00 | 3.30.300.180 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain | 0.57 | 40.0 | 4.14e-01 | 77.7% | 79.3% |
| 1zynA00 | 3.40.30.80 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.56 | 39.0 | 3.05e-01 | 71.3% | 70.9% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 41.0 | 3.54e-01 | 77.7% | 55.9% |
| 1f2dA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 43.0 | 3.26e-01 | 80.9% | 58.4% |
| 1d0nA06 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 39.0 | 3.63e-01 | 78.7% | 55.1% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.56 | 42.0 | 3.73e-01 | 79.8% | 66.9% |
| 1lqlA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.56 | 39.0 | 3.84e-01 | 73.4% | 71.8% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.56 | 42.0 | 2.91e-01 | 79.8% | 32.1% |
| 4l4qA02 | 3.30.300.340 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › S-adenosylmethionine synthetase, N-terminal domain | 0.56 | 42.0 | 3.79e-01 | 79.8% | 73.2% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 42.0 | 3.77e-01 | 80.9% | 78.0% |
| 7nasX01 | 3.30.300.70 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › RimP-like superfamily, N-terminal | 0.55 | 37.0 | 3.96e-01 | 75.5% | 81.0% |
| 3v7nA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 39.0 | 3.00e-01 | 73.4% | 95.5% |
| 1xe4A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 41.0 | 3.44e-01 | 79.8% | 79.9% |
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.55 | 39.0 | 3.45e-01 | 76.6% | 50.0% |
| 3tr3A00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.54 | 35.0 | 3.83e-01 | 73.4% | 80.5% |
| 1dljA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 41.0 | 3.29e-01 | 83.0% | 50.5% |
| 3bt7A02 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 41.0 | 3.60e-01 | 81.9% | 92.4% |
| 1a6fA00 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.54 | 37.0 | 3.52e-01 | 85.1% | 59.3% |
| 1ygpA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.54 | 40.0 | 2.81e-01 | 80.9% | 48.4% |
| 2dyjA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.54 | 36.0 | 3.72e-01 | 76.6% | 72.5% |
| 6lkvA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 44.0 | 3.90e-01 | 89.4% | 75.2% |
| 4ombA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 36.0 | 3.07e-01 | 71.3% | 89.0% |
| 4lizA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 36.0 | 3.28e-01 | 75.5% | 54.3% |
| 2kz0A01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.51 | 32.0 | 3.46e-01 | 71.3% | 81.7% |
| 3r0xA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 40.0 | 2.87e-01 | 88.3% | 76.4% |
| 8gj8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 42.0 | 3.15e-01 | 92.6% | 84.0% |
| 1josA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.50 | 37.0 | 3.71e-01 | 79.8% | 75.0% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082399 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.74 | 56.0 | 4.47e-01 | 79.8% | 66.7% |
| 5027537 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.71 | 56.0 | 5.05e-01 | 85.1% | 67.7% |
| 4933022 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.70 | 56.0 | 5.21e-01 | 84.0% | 70.4% |
| 3371640 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.67 | 49.0 | 3.08e-01 | 76.6% | 19.7% |
| 5041862 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.67 | 51.0 | 4.64e-01 | 85.1% | 61.7% |
| 5028843 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.66 | 53.0 | 5.09e-01 | 84.0% | 78.1% |
| 4957491 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.66 | 48.0 | 4.29e-01 | 74.5% | 73.6% |
| 4986386 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.66 | 51.0 | 4.45e-01 | 84.0% | 64.8% |
| 4967462 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.66 | 52.0 | 5.17e-01 | 86.2% | 84.0% |
| 5029780 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.65 | 52.0 | 4.61e-01 | 87.2% | 72.1% |
| 5031105 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.65 | 53.0 | 4.94e-01 | 87.2% | 79.1% |
| 5078678 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.65 | 51.0 | 4.94e-01 | 84.0% | 80.0% |
| 4948129 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.65 | 52.0 | 5.02e-01 | 86.2% | 84.8% |
| 5053524 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.65 | 52.0 | 4.78e-01 | 85.1% | 70.8% |
| 4934557 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.65 | 49.0 | 4.45e-01 | 83.0% | 59.4% |
| 3725665 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.65 | 47.0 | 4.16e-01 | 77.7% | 77.1% |
| 3226799 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.64 | 44.0 | 3.09e-01 | 71.3% | 26.0% |
| 5077484 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.64 | 50.0 | 4.55e-01 | 83.0% | 62.4% |
| 5031013 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.64 | 52.0 | 4.84e-01 | 86.2% | 75.7% |
| 5005557 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.64 | 48.0 | 4.42e-01 | 86.2% | 61.7% |
| 4992362 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.64 | 49.0 | 4.54e-01 | 86.2% | 64.2% |
| 4934391 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.63 | 47.0 | 4.49e-01 | 78.7% | 72.7% |
| 5057945 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.63 | 49.0 | 4.33e-01 | 85.1% | 83.4% |
| 4967501 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.63 | 49.0 | 4.53e-01 | 83.0% | 67.5% |
| 2698882 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.63 | 49.0 | 4.27e-01 | 83.0% | 57.4% |
| 2771782 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.63 | 44.0 | 4.08e-01 | 72.3% | 91.5% |
| 4943888 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.63 | 38.0 | 4.31e-01 | 71.3% | 81.4% |
| 3179912 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.62 | 46.0 | 4.14e-01 | 77.7% | 83.1% |
| 4993629 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.62 | 48.0 | 4.41e-01 | 83.0% | 63.2% |
| 4950923 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.62 | 50.0 | 4.38e-01 | 86.2% | 60.0% |
| 5073006 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.62 | 49.0 | 4.16e-01 | 86.2% | 61.3% |
| 5029313 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.61 | 48.0 | 4.72e-01 | 83.0% | 79.0% |
| 3700061 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.61 | 40.0 | 4.18e-01 | 72.3% | 71.6% |
| 5027454 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.61 | 47.0 | 4.38e-01 | 86.2% | 65.0% |
| 5045182 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.61 | 49.0 | 4.46e-01 | 86.2% | 65.3% |
| 4977138 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.61 | 47.0 | 4.35e-01 | 87.2% | 65.0% |
| 5054809 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.61 | 47.0 | 4.56e-01 | 85.1% | 74.3% |
| 3247936 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.61 | 42.0 | 4.13e-01 | 72.3% | 67.0% |
| 5073398 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.60 | 48.0 | 4.15e-01 | 87.2% | 62.7% |
| 4015565 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.60 | 43.0 | 3.97e-01 | 75.5% | 62.9% |
| 3744273 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.60 | 41.0 | 4.33e-01 | 71.3% | 81.2% |
| None | — | 0.60 | 41.0 | 4.49e-01 | 71.3% | 88.0% | |
| 3659162 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.59 | 48.0 | 3.75e-01 | 91.5% | 83.2% |
| 3731267 | 2492.1.1.32 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam | 0.58 | 47.0 | 4.03e-01 | 87.2% | 72.0% |
| 5078103 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.58 | 45.0 | 4.18e-01 | 85.1% | 65.0% |
| 4019820 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.58 | 45.0 | 4.16e-01 | 83.0% | 79.2% |
| 3198719 | 2492.1.1.32 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam | 0.57 | 46.0 | 4.14e-01 | 88.3% | 72.6% |
| 4210619 | 323.1.1.33 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › PF27279 | 0.57 | 46.0 | 3.04e-01 | 86.2% | 56.4% |
| 4275412 | 327.10.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA | 0.57 | 39.0 | 3.70e-01 | 70.2% | 59.1% |
| 4947673 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.57 | 42.0 | 4.12e-01 | 80.9% | 71.4% |
| 2157268 | 2494.1.1.1 ↗ | a/b three-layered sandwiches › DTD-like › DTD-like (Pfam 02580) › DTD-like (Pfam 02580) › Tyr_Deacylase | 0.57 | 48.0 | 4.02e-01 | 94.7% | 100.0% |
| 4804316 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.57 | 42.0 | 3.81e-01 | 78.7% | 59.7% |
| 4928866 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.56 | 40.0 | 3.64e-01 | 74.5% | 80.0% |
| 3214236 | 327.10.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA | 0.56 | 38.0 | 3.44e-01 | 73.4% | 50.0% |
| 3176426 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.56 | 36.0 | 3.60e-01 | 72.3% | 62.2% |
| 3202023 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.56 | 42.0 | 3.69e-01 | 78.7% | 58.5% |
| 3626624 | 2007.15.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase | 0.55 | 40.0 | 3.43e-01 | 76.6% | 59.7% |
| 4988581 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.55 | 42.0 | 3.72e-01 | 80.9% | 77.0% |
| 3617340 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.55 | 40.0 | 3.80e-01 | 77.7% | 64.5% |
| 3784662 | 2003.1.1.241 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PF30134 | 0.55 | 42.0 | 3.32e-01 | 83.0% | 67.3% |
| 3945514 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 42.0 | 3.14e-01 | 84.0% | 90.7% |
| 3389127 | 327.10.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA | 0.54 | 37.0 | 3.48e-01 | 74.5% | 56.7% |
| 3585258 | 300.1.1.9 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › MIT_C | 0.53 | 44.0 | 3.71e-01 | 90.4% | 86.3% |
| 3256346 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.53 | 40.0 | 3.62e-01 | 80.9% | 72.3% |
| 7400 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.53 | 42.0 | 3.27e-01 | 88.3% | 70.6% |
| 3405400 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.53 | 43.0 | 3.34e-01 | 90.4% | 81.8% |
| 3437716 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.52 | 38.0 | 3.56e-01 | 79.8% | 65.0% |
| 3931610 | 300.1.1.9 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › MIT_C | 0.52 | 43.0 | 3.44e-01 | 90.4% | 91.4% |
| 3732732 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.52 | 37.0 | 3.50e-01 | 76.6% | 65.3% |
| 4959508 | 327.5.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 | 0.50 | 37.0 | 3.59e-01 | 79.8% | 74.5% |
| 3722170 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.50 | 36.0 | 3.07e-01 | 76.6% | 48.8% |
D2
high
residues 130-279
Domain cluster:
rep: IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449110__D102-238
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04586.23 best | Peptidase_S78 | 28.4 | 2.30e-06 | 99.3% | 83.6% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.63 | 34.0 | 4.23e-01 | 98.0% | 83.9% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 31.0 | 4.05e-01 | 96.0% | 91.1% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 30.0 | 4.11e-01 | 95.3% | 94.7% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 31.0 | 4.04e-01 | 96.0% | 89.2% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.59 | 35.0 | 4.09e-01 | 96.0% | 83.7% |
| 4paaA03 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.59 | 36.0 | 3.33e-01 | 100.0% | 47.6% |
| 1u7lA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 31.0 | 3.89e-01 | 100.0% | 84.4% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 30.0 | 4.01e-01 | 95.3% | 93.7% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.58 | 31.0 | 3.81e-01 | 95.3% | 80.2% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 30.0 | 3.92e-01 | 95.3% | 92.5% |
| 2bhoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.57 | 31.0 | 3.48e-01 | 100.0% | 67.3% |
| 2j5aA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.57 | 34.0 | 3.99e-01 | 96.0% | 83.0% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 32.0 | 4.03e-01 | 97.3% | 94.3% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.56 | 36.0 | 4.03e-01 | 94.7% | 83.9% |
| 1lk5A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 30.0 | 3.95e-01 | 98.0% | 96.2% |
| 2od4B01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 32.0 | 4.02e-01 | 96.0% | 94.4% |
| 3c1mA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.56 | 33.0 | 3.22e-01 | 94.0% | 51.8% |
| 2e7vA01 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.56 | 37.0 | 4.29e-01 | 96.0% | 95.2% |
| 3cedA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 32.0 | 3.77e-01 | 98.7% | 83.7% |
| 7dluA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 30.0 | 3.96e-01 | 93.3% | 100.0% |
| 8cwoF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.55 | 32.0 | 3.99e-01 | 96.0% | 95.6% |
| 1vmbA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.55 | 33.0 | 3.81e-01 | 96.0% | 83.2% |
| 1xzpB00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.54 | 35.0 | 3.76e-01 | 100.0% | 74.0% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 33.0 | 3.92e-01 | 97.3% | 88.3% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 31.0 | 3.81e-01 | 96.0% | 87.6% |
| 5ixuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 33.0 | 3.85e-01 | 97.3% | 88.2% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.53 | 33.0 | 3.85e-01 | 95.3% | 92.0% |
| 4lbhA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.53 | 31.0 | 3.78e-01 | 94.7% | 92.6% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.52 | 30.0 | 3.55e-01 | 92.0% | 81.6% |
| 1r6yA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 33.0 | 3.93e-01 | 94.7% | 93.2% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.51 | 36.0 | 4.01e-01 | 96.7% | 93.2% |
| 3udcA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.76e-01 | 85.3% | 100.0% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 35.0 | 3.94e-01 | 95.3% | 93.0% |
| 3i3wA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.50 | 27.0 | 3.57e-01 | 94.7% | 100.0% |
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 28.0 | 3.30e-01 | 96.0% | 78.8% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 34.0 | 3.88e-01 | 95.3% | 92.1% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.50 | 29.0 | 3.61e-01 | 96.0% | 97.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929754 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.80 | 66.0 | 7.09e-01 | 94.7% | 98.5% |
| 5039158 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.79 | 74.0 | 7.27e-01 | 99.3% | 100.0% |
| 4032431 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.79 | 72.0 | 7.15e-01 | 97.3% | 92.9% |
| 5083920 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.78 | 69.0 | 7.16e-01 | 92.0% | 100.0% |
| 3980142 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.77 | 69.0 | 6.99e-01 | 95.3% | 94.7% |
| 5027949 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.63 | 33.0 | 4.31e-01 | 96.7% | 94.9% |
| 3365659 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.61 | 30.0 | 3.78e-01 | 96.0% | 76.7% |
| 4033935 | 304.8.1.22 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT | 0.60 | 31.0 | 4.15e-01 | 95.3% | 97.3% |
| 3396071 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 31.0 | 4.06e-01 | 95.3% | 97.3% |
| 4070960 | 304.52.1.1 ↗ | a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 | 0.59 | 32.0 | 4.12e-01 | 97.3% | 92.9% |
| 3915011 | 389.1.1.7 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA | 0.59 | 34.0 | 3.35e-01 | 96.0% | 51.9% |
| 4996340 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.58 | 30.0 | 3.94e-01 | 95.3% | 91.3% |
| 3488149 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 31.0 | 3.98e-01 | 97.3% | 91.8% |
| 5047519 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.58 | 31.0 | 3.97e-01 | 96.0% | 93.8% |
| 3282643 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 31.0 | 3.95e-01 | 96.7% | 95.0% |
| 5039437 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.57 | 31.0 | 3.91e-01 | 97.3% | 91.8% |
| 4962586 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.57 | 31.0 | 3.95e-01 | 97.3% | 94.0% |
| 3250928 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 29.0 | 3.85e-01 | 95.3% | 92.5% |
| 4248583 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.56 | 33.0 | 3.64e-01 | 96.0% | 71.7% |
| 4229727 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.55 | 32.0 | 3.38e-01 | 96.0% | 61.4% |
| 3602951 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.55 | 35.0 | 4.04e-01 | 95.3% | 90.5% |
| 4167213 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.54 | 31.0 | 3.66e-01 | 96.0% | 82.0% |
| 3736344 | 304.28.1.16 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › AtuA | 0.53 | 33.0 | 3.72e-01 | 96.0% | 82.7% |
| 5175 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.53 | 34.0 | 3.97e-01 | 94.7% | 93.2% |
| 3731090 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.53 | 33.0 | 3.93e-01 | 95.3% | 94.0% |
| 3484885 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.52 | 43.0 | 4.42e-01 | 98.0% | 91.7% |
| 4998201 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.52 | 30.0 | 3.85e-01 | 79.3% | 100.0% |
| 3279814 | 304.28.1.16 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › AtuA | 0.52 | 33.0 | 3.67e-01 | 96.7% | 81.7% |
| 3729211 | 304.4.1.49 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AtuA | 0.51 | 33.0 | 3.70e-01 | 96.7% | 83.5% |
| 4554484 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.51 | 31.0 | 3.19e-01 | 94.7% | 61.4% |