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YP_010772037.1

Arc-Vir

NC_074638__YP_010772037.1__QIT35-gp47__00047

Identity

Accession:
NC_074638 ↗
Protein ID:
YP_010772037.1 ↗
Kingdom:
archaea

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ahpuchviridae› Kisinvirus› Methanophagales_virus_PBV299

TaxID: 2987730

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-81
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.77 65.0 6.06e-01 100.0% 73.2%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.75 57.0 6.18e-01 89.6% 98.4%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.69 57.0 5.77e-01 92.2% 92.0%
3v53E00 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.68 57.0 5.27e-01 100.0% 71.6%
4nleA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.68 54.0 5.43e-01 84.4% 89.5%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.67 46.0 4.39e-01 100.0% 61.1%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.65 42.0 4.86e-01 81.8% 94.4%
3fvvA02 1.20.1440.100 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function 0.64 46.0 4.73e-01 76.6% 85.3%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.64 53.0 4.77e-01 93.5% 65.7%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.63 53.0 5.11e-01 100.0% 83.1%
2w9mA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.63 48.0 5.01e-01 98.7% 92.6%
2hyjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 42.0 3.47e-01 70.1% 44.9%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 52.0 5.15e-01 98.7% 98.8%
3mzvA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.62 51.0 3.52e-01 97.4% 85.1%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.61 38.0 3.79e-01 97.4% 60.8%
3c18A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 41.0 3.60e-01 70.1% 81.4%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.61 53.0 4.00e-01 100.0% 78.2%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.61 53.0 5.10e-01 100.0% 86.0%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 43.0 4.48e-01 81.8% 84.3%
1y8aA02 1.10.3870.10 Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily 0.60 45.0 3.92e-01 79.2% 100.0%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.60 43.0 3.47e-01 76.6% 55.5%
3on3B00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.59 52.0 4.03e-01 100.0% 49.1%
1v07A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 52.0 4.66e-01 100.0% 79.1%
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 49.0 3.43e-01 98.7% 47.3%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 44.0 4.46e-01 100.0% 80.8%
1x9fD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 50.0 4.23e-01 100.0% 66.4%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 41.0 3.83e-01 72.7% 94.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.57 42.0 3.77e-01 80.5% 92.3%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.57 46.0 4.03e-01 94.8% 94.0%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 43.0 4.51e-01 100.0% 95.5%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.57 38.0 3.66e-01 74.0% 57.4%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 48.0 4.06e-01 97.4% 77.7%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 49.0 4.07e-01 97.4% 97.1%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 38.0 3.52e-01 79.2% 54.0%
5tw1D01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.55 39.0 3.28e-01 100.0% 40.4%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.54 38.0 3.37e-01 74.0% 84.9%
7p5hB03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.54 45.0 4.39e-01 100.0% 95.5%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.53 40.0 3.84e-01 83.1% 94.5%
3rh3A01 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.53 37.0 3.13e-01 72.7% 85.0%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 43.0 3.22e-01 93.5% 78.7%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 37.0 3.49e-01 75.3% 98.0%
5vjhB03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.13e-01 94.8% 54.0%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.51 41.0 3.59e-01 93.5% 70.2%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.50 33.0 3.56e-01 97.4% 77.6%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3192660 509.1.1.9 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.88 75.0 6.99e-01 100.0% 74.7%
4011370 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.87 75.0 6.93e-01 100.0% 74.7%
3485423 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.80 59.0 3.99e-01 77.9% 39.6%
3737108 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.77 59.0 6.35e-01 90.9% 98.5%
3730259 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.76 57.0 6.10e-01 89.6% 93.8%
3276782 509.1.1.9 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.75 60.0 5.65e-01 98.7% 72.0%
3518787 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.75 58.0 6.23e-01 89.6% 98.5%
3813335 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.73 65.0 6.20e-01 100.0% 84.4%
3737312 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.73 54.0 5.55e-01 89.6% 82.7%
5055960 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.72 51.0 4.39e-01 74.0% 81.7%
3480706 4218.1.1.1 ↗ alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH 0.72 59.0 5.77e-01 98.7% 81.2%
3593355 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.72 59.0 5.55e-01 94.8% 73.7%
4927448 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.71 46.0 4.63e-01 90.9% 65.0%
3709633 509.1.1.9 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.70 57.0 5.29e-01 100.0% 71.0%
3818442 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.70 58.0 5.82e-01 93.5% 96.2%
4976887 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.70 61.0 4.27e-01 100.0% 38.8%
3453253 509.1.1.9 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.69 56.0 5.30e-01 96.1% 72.6%
143586 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.69 57.0 5.77e-01 92.2% 92.0%
3202292 101.38.1.3 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF6891 0.68 50.0 5.23e-01 85.7% 85.7%
3222052 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.68 37.0 2.87e-01 100.0% 24.8%
3530449 604.12.1.131 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF27853 0.67 49.0 4.46e-01 77.9% 92.4%
3815745 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.67 57.0 5.68e-01 98.7% 95.0%
5002850 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.66 48.0 4.52e-01 77.9% 64.2%
3784553 592.1.1.6 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.65 54.0 5.24e-01 92.2% 83.5%
3016249 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.65 55.0 5.10e-01 100.0% 74.7%
4644747 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.63 51.0 5.08e-01 97.4% 86.3%
4362811 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 43.0 4.85e-01 90.9% 98.2%
3249906 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.63 45.0 4.41e-01 76.6% 81.2%
4029946 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 43.0 2.42e-01 71.4% 5.8%
5015055 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.62 56.0 3.98e-01 100.0% 33.8%
4010659 101.1.1.243 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Rpn_C 0.62 44.0 3.67e-01 77.9% 41.4%
5065210 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.61 51.0 5.10e-01 90.9% 92.5%
3255773 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.61 52.0 5.16e-01 94.8% 91.3%
4971151 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.61 54.0 4.07e-01 100.0% 45.2%
5039202 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.60 53.0 3.77e-01 100.0% 45.4%
3274434 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.60 46.0 4.50e-01 88.3% 75.3%
4271175 101.1.2.498 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25870 0.60 46.0 3.87e-01 84.4% 83.7%
4333723 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.59 43.0 3.02e-01 76.6% 34.4%
4589611 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.59 49.0 3.79e-01 97.4% 64.6%
4417777 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.59 44.0 3.82e-01 83.1% 73.8%
4953311 604.20.1.0 ↗ alpha bundles › Spectrin repeat-like › C-terminal domain in hypothetical protein BACOVA_03992 › C-terminal domain in hypothetical protein BACOVA_03992 0.59 48.0 4.44e-01 90.9% 88.0%
3262552 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.58 42.0 4.33e-01 89.6% 80.0%
4184996 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.58 46.0 3.17e-01 88.3% 34.7%
5002642 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.58 39.0 3.67e-01 70.1% 54.5%
3273958 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.57 44.0 4.31e-01 89.6% 76.5%
4203130 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 41.0 3.68e-01 100.0% 51.3%
3248091 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.57 43.0 4.20e-01 88.3% 75.3%
3475328 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.57 41.0 4.19e-01 96.1% 80.0%
4026288 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.57 47.0 3.51e-01 96.1% 81.7%
3979831 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 36.0 3.84e-01 71.4% 76.9%
3998880 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 4.28e-01 97.4% 73.7%
3252439 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.55 42.0 4.22e-01 89.6% 81.2%
5032080 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.55 40.0 3.57e-01 77.9% 82.6%
3578718 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.55 45.0 4.25e-01 98.7% 75.8%