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YP_010772052.1

Arc-Vir

NC_074638__YP_010772052.1__QIT35-gp62__00062

Identity

Accession:
NC_074638 ↗
Protein ID:
YP_010772052.1 ↗
Kingdom:
archaea

Quality

70.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ahpuchviridae› Kisinvirus› Methanophagales_virus_PBV299

TaxID: 2987730

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-135
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.66 35.0 3.54e-01 75.6% 50.0%
7xcnM01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.65 37.0 3.97e-01 77.8% 64.1%
2pg0A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.62 36.0 3.27e-01 70.0% 43.6%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 43.0 3.63e-01 73.3% 78.1%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.60 44.0 4.05e-01 86.7% 59.8%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 41.0 3.48e-01 73.3% 82.2%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.59 43.0 4.38e-01 91.1% 79.1%
3b34A05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.58 38.0 2.59e-01 100.0% 18.2%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 49.0 4.52e-01 92.2% 77.9%
3ripA02 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.57 41.0 2.93e-01 75.6% 25.1%
1bucA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.57 37.0 3.33e-01 77.8% 48.0%
2qsaA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.55 42.0 4.10e-01 82.2% 83.2%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.55 41.0 3.71e-01 78.9% 57.9%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 45.0 3.63e-01 92.2% 46.3%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 40.0 3.49e-01 92.2% 50.4%
4o92A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 37.0 3.53e-01 85.6% 60.0%
3oyxA02 1.20.58.1560 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 35.0 3.89e-01 90.0% 88.1%
4j8sA00 1.25.40.840 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain 0.54 44.0 3.59e-01 95.6% 45.6%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 41.0 3.42e-01 81.1% 53.2%
2ckoA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.54 47.0 3.41e-01 100.0% 75.4%
4hteA02 1.20.58.1740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 41.0 3.76e-01 81.1% 87.2%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 40.0 3.69e-01 80.0% 71.8%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 37.0 3.37e-01 73.3% 54.8%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 41.0 3.86e-01 91.1% 66.7%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 47.0 4.03e-01 98.9% 85.3%
4flbA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 38.0 3.45e-01 100.0% 54.2%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 41.0 3.78e-01 85.6% 74.2%
2qkwA00 1.20.1270.140 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto 0.52 38.0 3.67e-01 75.6% 72.3%
2e9xD01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 46.0 4.01e-01 100.0% 65.7%
4h79A00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.51 37.0 2.95e-01 75.6% 80.8%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5071514 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 42.0 4.56e-01 82.2% 73.3%
3187407 633.10.1.4 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › DUF3429 0.67 46.0 3.71e-01 71.1% 87.1%
3385366 601.14.1.9 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Piezo_THU9_anchor 0.66 46.0 4.10e-01 72.2% 98.5%
4013477 1025.1.1.0 ↗ alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain 0.66 48.0 4.52e-01 76.7% 73.6%
3347726 150.1.1.104 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Piezo_THU9_anchor 0.65 47.0 4.15e-01 75.6% 100.0%
5043412 1025.1.1.0 ↗ alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain 0.64 47.0 4.31e-01 75.6% 72.2%
3452232 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 44.0 3.39e-01 74.4% 73.5%
4034051 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.61 45.0 3.04e-01 77.8% 50.8%
5046916 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.60 45.0 3.08e-01 80.0% 90.2%
3386988 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.59 48.0 3.60e-01 87.8% 36.4%
3288075 2004.1.1.600 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn, AAA_21 0.59 43.0 2.61e-01 75.6% 23.7%
5057882 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.59 49.0 4.46e-01 95.6% 69.2%
3931307 601.1.2.4 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4 0.57 45.0 3.87e-01 85.6% 95.2%
4321419 4156.1.1.6 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.57 49.0 4.17e-01 94.4% 92.4%
4979111 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.57 48.0 4.62e-01 91.1% 81.0%
3275300 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.57 50.0 3.51e-01 100.0% 33.7%
3791831 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.56 42.0 3.21e-01 80.0% 74.1%
3816833 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 49.0 3.52e-01 100.0% 32.1%
4983447 3457.1.1.3 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.55 40.0 2.89e-01 76.7% 85.7%
224058 3630.1.1.1 ↗ alpha bundles › Nicking enzyme middle helical domain › Nicking enzyme middle helical domain › Nicking enzyme middle helical domain › NES_C_h 0.55 46.0 4.30e-01 93.3% 85.1%
4963273 622.1.1.37 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › PF25926 0.55 48.0 4.40e-01 95.6% 96.5%
3678972 604.6.1.38 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › CASP_dom 0.54 43.0 4.10e-01 87.8% 76.1%
3628186 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.53 42.0 3.73e-01 85.6% 89.2%
4015415 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 47.0 3.80e-01 100.0% 55.4%
4510293 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.51 37.0 3.84e-01 94.4% 83.5%
5053950 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.50 45.0 3.12e-01 97.8% 81.4%
3961229 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.50 41.0 3.18e-01 86.7% 61.6%