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YP_010772057.1
Arc-VirNC_074638__YP_010772057.1__QIT35-gp67__00067
Identity
- Accession:
- NC_074638 ↗
- Protein ID:
- YP_010772057.1 ↗
- Kingdom:
- archaea
Quality
77.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Nakonvirales›
Ahpuchviridae›
Kisinvirus›
Methanophagales_virus_PBV299
TaxID: 2987730
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-86
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hesX00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 40.0 | 2.65e-01 | 81.2% | 15.9% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.65 | 34.0 | 3.55e-01 | 75.0% | 50.6% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.60 | 40.0 | 3.96e-01 | 85.0% | 64.3% |
| 3gkeA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.58 | 36.0 | 3.12e-01 | 100.0% | 39.2% |
| 1xkiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 42.0 | 3.63e-01 | 98.8% | 49.2% |
| 4g7nA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 41.0 | 3.57e-01 | 75.0% | 62.8% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 44.0 | 3.78e-01 | 100.0% | 51.5% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.56 | 39.0 | 3.98e-01 | 100.0% | 75.6% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.56 | 40.0 | 3.42e-01 | 75.0% | 86.0% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 29.0 | 3.33e-01 | 98.8% | 66.7% |
| 4jn7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 43.0 | 3.73e-01 | 82.5% | 82.4% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 46.0 | 3.21e-01 | 96.2% | 70.7% |
| 3dg6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 42.0 | 3.71e-01 | 81.2% | 96.5% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.54 | 33.0 | 3.22e-01 | 81.2% | 53.3% |
| 7sk7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 45.0 | 3.26e-01 | 96.2% | 73.9% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 29.0 | 3.30e-01 | 93.8% | 71.4% |
| 3ijtB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 42.0 | 3.54e-01 | 100.0% | 49.0% |
| 4dy0B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 38.0 | 3.30e-01 | 90.0% | 47.7% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 30.0 | 3.28e-01 | 87.5% | 68.3% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 42.0 | 3.64e-01 | 100.0% | 54.0% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 28.0 | 3.02e-01 | 98.8% | 56.7% |
| 3mkcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 43.0 | 3.53e-01 | 90.0% | 78.5% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 38.0 | 3.23e-01 | 98.8% | 45.1% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.52 | 31.0 | 3.72e-01 | 80.0% | 94.1% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 43.0 | 3.70e-01 | 100.0% | 71.9% |
| 4qqsB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 36.0 | 2.43e-01 | 75.0% | 92.7% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.51 | 36.0 | 3.03e-01 | 90.0% | 43.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.82 | 36.0 | 4.04e-01 | 100.0% | 52.3% |
| 3605879 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.81 | 35.0 | 4.63e-01 | 100.0% | 73.3% |
| 3499988 | 5.1.4.327 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd | 0.74 | 45.0 | 2.53e-01 | 81.2% | 5.9% |
| 3487112 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.74 | 44.0 | 2.72e-01 | 81.2% | 10.3% |
| 3273263 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.71 | 45.0 | 2.78e-01 | 81.2% | 12.5% |
| 4862662 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.68 | 40.0 | 2.58e-01 | 81.2% | 12.9% |
| 4936581 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.67 | 47.0 | 4.70e-01 | 100.0% | 70.6% |
| 3310306 | 1.1.1.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N | 0.66 | 46.0 | 3.07e-01 | 98.8% | 19.1% |
| 3603190 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 37.0 | 2.17e-01 | 80.0% | 6.9% |
| 3510918 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.61 | 38.0 | 3.19e-01 | 71.2% | 36.3% |
| 3291057 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 34.0 | 3.68e-01 | 80.0% | 62.9% |
| 3498091 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.61 | 45.0 | 3.91e-01 | 100.0% | 50.0% |
| 3350473 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.60 | 43.0 | 4.53e-01 | 98.8% | 87.1% |
| 5078666 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.60 | 51.0 | 3.39e-01 | 96.2% | 45.6% |
| 1095153 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 41.0 | 2.58e-01 | 81.2% | 14.5% |
| 3509038 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.58 | 41.0 | 3.89e-01 | 100.0% | 61.0% |
| 3587060 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 35.0 | 3.63e-01 | 78.8% | 64.0% |
| 3934802 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.56 | 44.0 | 4.19e-01 | 100.0% | 72.6% |
| 3611332 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 38.0 | 2.39e-01 | 81.2% | 13.3% |
| 4927548 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.54 | 46.0 | 4.10e-01 | 97.5% | 83.3% |
| 3578085 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.54 | 48.0 | 4.39e-01 | 97.5% | 75.2% |
| 3190757 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.54 | 34.0 | 3.72e-01 | 86.3% | 83.3% |
| 3624184 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 46.0 | 4.11e-01 | 97.5% | 66.1% |
| 3241447 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 43.0 | 3.71e-01 | 100.0% | 56.7% |
| 3607609 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.53 | 45.0 | 3.28e-01 | 100.0% | 34.4% |
| 3780792 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 34.0 | 3.05e-01 | 100.0% | 44.3% |
| 3320473 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.52 | 36.0 | 2.44e-01 | 70.0% | 30.1% |
| 5052205 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.51 | 35.0 | 2.07e-01 | 71.2% | 67.9% |
| 3579362 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.51 | 45.0 | 4.03e-01 | 97.5% | 70.0% |
| 3212468 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.51 | 41.0 | 3.87e-01 | 100.0% | 71.0% |
| 4222919 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.51 | 41.0 | 3.59e-01 | 91.3% | 69.6% |
| 3274180 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.50 | 37.0 | 3.34e-01 | 97.5% | 56.4% |
| 3619980 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 45.0 | 4.03e-01 | 100.0% | 71.8% |