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YP_010772110.1

Arc-Vir

NC_074639__YP_010772110.1__QIT36-gp027__00027

Identity

Accession:
NC_074639 ↗
Protein ID:
YP_010772110.1 ↗
Kingdom:
archaea

Quality

53.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 133-197
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 64.0 5.48e-01 95.4% 71.3%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 4.89e-01 96.9% 46.5%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 64.0 5.97e-01 95.4% 87.3%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 63.0 5.57e-01 95.4% 74.5%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 5.87e-01 95.4% 81.8%
1lvaA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 5.99e-01 100.0% 96.7%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 4.76e-01 100.0% 45.5%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 61.0 5.45e-01 98.5% 81.1%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 5.78e-01 96.9% 84.7%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 62.0 5.75e-01 100.0% 88.1%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 60.0 5.56e-01 93.8% 84.0%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 4.87e-01 95.4% 61.1%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.22e-01 100.0% 65.6%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.44e-01 96.9% 70.8%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.69 52.0 4.69e-01 81.5% 61.1%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.12e-01 100.0% 66.3%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 4.35e-01 100.0% 39.7%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 5.73e-01 100.0% 83.1%
1x1aA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 4.07e-01 100.0% 33.9%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 59.0 5.20e-01 100.0% 68.1%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.33e-01 93.8% 87.2%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 59.0 5.21e-01 100.0% 74.0%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.32e-01 100.0% 89.2%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 4.75e-01 100.0% 53.2%
2iw5B00 1.20.58.1880 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 52.0 4.22e-01 95.4% 43.6%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.38e-01 98.5% 84.9%
1wgxA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 48.0 4.69e-01 83.1% 71.2%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.07e-01 93.8% 82.1%
3go5A04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 5.50e-01 95.4% 98.4%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 52.0 3.78e-01 90.8% 58.0%
2fbqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 54.0 3.81e-01 98.5% 58.7%
3e0fA02 1.10.150.650 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.62 44.0 4.25e-01 75.4% 77.0%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 42.0 4.74e-01 81.5% 100.0%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 46.0 4.59e-01 83.1% 97.0%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 41.0 4.01e-01 73.8% 64.8%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 45.0 4.53e-01 86.2% 82.4%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 42.0 4.24e-01 75.4% 97.0%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 42.0 3.93e-01 75.4% 81.5%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 42.0 4.10e-01 83.1% 69.7%
2qkmB01 1.10.10.1050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dcp2, box A domain 0.57 45.0 3.98e-01 90.8% 70.6%
1abvA00 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.57 47.0 4.19e-01 100.0% 99.0%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 39.0 3.93e-01 81.5% 74.6%
1puoB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.53 46.0 3.63e-01 100.0% 54.9%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 44.0 3.44e-01 95.4% 93.3%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 41.0 4.08e-01 96.9% 100.0%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.51 37.0 3.60e-01 92.3% 71.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5009797 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.78 62.0 4.96e-01 96.9% 45.8%
3982775 101.1.1.202 alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.77 61.0 6.38e-01 90.8% 91.7%
5028120 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 61.0 6.01e-01 100.0% 80.0%
4931635 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.76 66.0 6.07e-01 100.0% 73.8%
4962601 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 63.0 6.02e-01 100.0% 77.3%
3169446 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.76 67.0 6.58e-01 96.9% 92.9%
4950831 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 62.0 6.08e-01 100.0% 82.9%
4185879 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.74 61.0 5.59e-01 100.0% 69.4%
3792105 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.74 61.0 6.32e-01 95.4% 98.3%
3971293 101.1.2.845 alpha arrays › HTH › HTH › winged helix domain › SelB-wing_3, SelB_WH_2nd_bact 0.73 62.0 4.94e-01 100.0% 46.9%
4659973 101.1.2.162 alpha arrays › HTH › HTH › winged helix domain › DprA_WH 0.73 59.0 5.51e-01 96.9% 71.2%
5033536 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 5.40e-01 96.9% 59.1%
4025625 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 6.41e-01 100.0% 92.8%
4997093 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 5.79e-01 95.4% 82.3%
5078848 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 4.80e-01 100.0% 49.2%
4928684 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.71 61.0 5.73e-01 100.0% 77.5%
5017632 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.71 59.0 5.99e-01 96.9% 92.3%
5038669 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.71 65.0 5.30e-01 100.0% 57.4%
4162612 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.71 58.0 4.73e-01 100.0% 48.3%
3194947 101.1.2.284 alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.71 59.0 5.72e-01 100.0% 82.7%
4963422 101.1.7.1 alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 0.71 59.0 5.39e-01 92.3% 95.3%
3986601 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.70 58.0 5.48e-01 95.4% 75.0%
5046087 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.60e-01 93.8% 76.2%
2686 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.70 54.0 4.87e-01 95.4% 61.1%
4963411 101.1.2.938 alpha arrays › HTH › HTH › winged helix domain › PF25947 0.70 59.0 5.80e-01 100.0% 90.0%
5025290 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.70 58.0 4.63e-01 96.9% 46.2%
3628026 101.1.2.200 alpha arrays › HTH › HTH › winged helix domain › HTH_65 0.70 62.0 5.44e-01 98.5% 69.5%
2701 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.69 60.0 5.44e-01 96.9% 70.8%
5014337 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 62.0 5.57e-01 100.0% 72.2%
5022793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.87e-01 96.9% 100.0%
4488173 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.40e-01 100.0% 76.7%
3648590 101.1.2.497 alpha arrays › HTH › HTH › winged helix domain › PF25874 0.68 58.0 5.48e-01 98.5% 97.5%
3236431 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 54.0 5.29e-01 86.2% 84.3%
4618903 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.68 56.0 5.26e-01 92.3% 96.2%
3590342 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.68 55.0 5.43e-01 100.0% 82.9%
3602953 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 60.0 5.87e-01 100.0% 95.7%
4282998 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 4.78e-01 100.0% 52.5%
3989292 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 4.69e-01 96.9% 50.8%
5038818 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.68 58.0 3.85e-01 98.5% 43.6%
3588171 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.67 58.0 4.58e-01 100.0% 49.0%
4877083 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.67 58.0 4.61e-01 100.0% 47.7%
5052426 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.67 57.0 4.51e-01 95.4% 45.9%
4011519 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 50.0 5.18e-01 81.5% 90.0%
4998572 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.17e-01 100.0% 74.1%
4939871 101.1.2.896 alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.65 56.0 4.87e-01 100.0% 64.8%
3251747 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 46.0 5.07e-01 76.9% 100.0%
4980131 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 4.53e-01 95.4% 63.6%
4531271 101.1.2.498 alpha arrays › HTH › HTH › winged helix domain › PF25870 0.64 54.0 4.26e-01 100.0% 58.0%
4268623 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 4.48e-01 100.0% 50.0%
4090142 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.63 56.0 4.81e-01 100.0% 61.9%
4199769 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.63 55.0 3.85e-01 100.0% 29.5%
3184003 101.1.1.216 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_8 0.62 45.0 4.76e-01 83.1% 94.5%
3981463 3536.1.1.1 a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › YceG 0.61 53.0 4.63e-01 100.0% 81.0%
3640777 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 44.0 4.46e-01 80.0% 83.1%
3737796 101.1.1.10 alpha arrays › HTH › HTH › Three-helical HTH › ARID 0.60 51.0 4.67e-01 100.0% 71.1%
4970916 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.29e-01 95.4% 75.2%
4201679 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 50.0 4.67e-01 100.0% 74.1%
5064866 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.11e-01 95.4% 71.8%
3738994 168.1.1.1 alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.57 49.0 3.56e-01 100.0% 33.8%
3279933 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.57 46.0 3.69e-01 93.8% 93.1%
4945430 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.41e-01 100.0% 75.8%
3318879 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 43.0 4.31e-01 81.5% 83.1%
3507798 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.55 41.0 4.15e-01 80.0% 86.2%
5033199 210.1.2.4 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT 0.51 42.0 2.68e-01 100.0% 36.8%
D2 medium residues 18-130
PDB