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YP_010772321.1

Arc-Vir

NC_074641__YP_010772321.1__QIT38-gp26__00026

Identity

Accession:
NC_074641 ↗
Protein ID:
YP_010772321.1 ↗
Kingdom:
archaea

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fervensviridae› Deepoceanvirus› Methanocaldococcus_fervens_tailed_virus_1

TaxID: 2759191

Cluster

View cluster (33 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-64
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.78 70.0 5.11e-01 100.0% 84.9%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 55.0 5.43e-01 100.0% 81.2%
5tk8A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.68 55.0 3.89e-01 90.2% 75.9%
2kruA01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.68 49.0 5.27e-01 90.2% 92.3%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.67 54.0 5.23e-01 91.8% 81.7%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.67 51.0 5.26e-01 90.2% 91.4%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 53.0 4.96e-01 100.0% 72.2%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.64 46.0 4.91e-01 91.8% 92.3%
3maeA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.63 50.0 3.42e-01 90.2% 85.0%
1u7gA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.62 50.0 3.14e-01 95.1% 31.3%
3ehmA03 1.20.120.840 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain 0.62 51.0 4.19e-01 95.1% 71.2%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 49.0 4.19e-01 100.0% 53.4%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.61 50.0 4.36e-01 93.4% 97.9%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.47e-01 100.0% 78.6%
1w5sA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 47.0 4.25e-01 88.5% 61.4%
1jcfA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 53.0 4.98e-01 100.0% 97.4%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 53.0 4.27e-01 100.0% 83.1%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.59 53.0 4.62e-01 100.0% 67.0%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 48.0 4.22e-01 100.0% 71.8%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 47.0 4.51e-01 93.4% 95.9%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 48.0 3.85e-01 96.7% 91.6%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 46.0 3.52e-01 100.0% 38.4%
2d8dB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.57 39.0 3.55e-01 70.5% 60.2%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.57 41.0 4.43e-01 90.2% 100.0%
6ianC01 1.10.418.70 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain 0.57 48.0 3.95e-01 98.4% 85.8%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 46.0 4.47e-01 100.0% 80.9%
1c7nA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 50.0 3.41e-01 100.0% 98.2%
1z82B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 48.0 3.77e-01 100.0% 66.7%
2eucA00 1.10.8.570 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Hypothetical protein YfmB 0.56 48.0 4.06e-01 100.0% 93.5%
2ky4A01 1.10.3130.20 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain 0.55 46.0 3.72e-01 100.0% 93.1%
1d2fA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 47.0 3.19e-01 100.0% 90.5%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.54 43.0 3.33e-01 91.8% 48.4%
2gb3A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 48.0 3.23e-01 100.0% 91.9%
3nrkA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.54 42.0 3.02e-01 90.2% 73.3%
2x5dD02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 48.0 3.18e-01 100.0% 90.0%
2scpA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 44.0 3.31e-01 100.0% 54.6%
2jqtA00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.52 32.0 3.37e-01 80.3% 66.7%
6yigA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 40.0 3.64e-01 91.8% 61.4%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602245 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.96 89.0 8.66e-01 100.0% 90.8%
4993942 3009.1.1.14 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DUF2240 0.89 69.0 7.52e-01 95.1% 100.0%
5030514 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.86 67.0 7.29e-01 90.2% 100.0%
4948166 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.85 68.0 7.16e-01 100.0% 94.5%
4945681 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.85 69.0 7.19e-01 100.0% 96.4%
5004284 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.82 63.0 4.56e-01 93.4% 31.2%
4962646 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.82 63.0 6.92e-01 91.8% 100.0%
4930093 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.81 62.0 6.73e-01 91.8% 98.0%
5004105 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.81 61.0 6.65e-01 91.8% 98.0%
5039924 101.1.2.894 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.80 66.0 4.88e-01 98.4% 37.2%
3741412 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.79 70.0 5.20e-01 100.0% 72.3%
5016159 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.79 60.0 6.13e-01 95.1% 83.3%
4974454 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.73 65.0 4.37e-01 100.0% 34.0%
4539173 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.73 60.0 4.00e-01 100.0% 24.5%
4951392 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 66.0 4.82e-01 98.4% 42.0%
4940866 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.72 44.0 3.12e-01 75.4% 21.8%
5050058 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 58.0 4.09e-01 100.0% 30.3%
5002913 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.70 42.0 3.04e-01 75.4% 21.8%
5005242 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.67 42.0 2.92e-01 73.8% 19.5%
4530474 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.67 54.0 4.92e-01 100.0% 67.5%
3884427 103.11.1.1 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N 0.66 51.0 5.03e-01 90.2% 81.5%
3535212 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.64 51.0 4.43e-01 85.2% 68.9%
3281755 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.64 50.0 5.07e-01 88.5% 91.7%
3805676 1128.1.1.13 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 0.64 50.0 4.50e-01 90.2% 73.3%
3438405 386.1.1.310 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1677 0.64 52.0 5.01e-01 88.5% 89.9%
4506346 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.62 45.0 4.93e-01 88.5% 98.0%
4053752 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.61 43.0 4.34e-01 90.2% 76.7%
3183395 108.1.1.14 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF_assoc_2 0.61 49.0 3.96e-01 91.8% 68.8%
5025739 4953.1.1.2 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.60 51.0 4.85e-01 100.0% 84.0%
3806425 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 52.0 3.24e-01 100.0% 18.6%
1031090 3705.1.1.1 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › T2SS_PulS_OutS 0.59 53.0 4.62e-01 100.0% 67.0%
3705639 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.59 50.0 4.05e-01 100.0% 94.6%
3802179 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 45.0 3.71e-01 90.2% 50.4%
3839524 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.57 44.0 3.30e-01 86.9% 97.5%
3705956 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.56 46.0 4.16e-01 100.0% 78.9%
3213603 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.54 42.0 3.60e-01 90.2% 87.3%
3425325 101.1.1.138 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.54 42.0 3.79e-01 85.2% 69.4%
3392938 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.53 43.0 3.24e-01 93.4% 98.8%
3954237 532.2.1.16 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › DUF732 0.53 40.0 3.77e-01 96.7% 66.3%
3475712 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.53 37.0 3.64e-01 78.7% 67.1%
3285884 103.1.1.127 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RelA_AH_RIS 0.52 40.0 3.84e-01 90.2% 85.3%
5021927 101.1.1.550 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF1016_N 0.52 40.0 3.26e-01 86.9% 57.6%
3960575 610.4.1.0 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain 0.52 43.0 3.35e-01 100.0% 60.7%
4363156 108.1.1.104 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_8 0.50 42.0 3.16e-01 100.0% 56.9%
5058630 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.50 42.0 4.19e-01 96.7% 92.3%
D2 high residues 90-309
PDB
Domain cluster: rep: MH494197.1__AXC39221.1__X__00509__D22-210