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YP_010772329.1

Arc-Vir

NC_074641__YP_010772329.1__QIT38-gp34__00034

Identity

Accession:
NC_074641 ↗
Protein ID:
YP_010772329.1 ↗
Kingdom:
archaea

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fervensviridae› Deepoceanvirus› Methanocaldococcus_fervens_tailed_virus_1

TaxID: 2759191

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-134
PDB
Domain cluster: rep: IMGVR_UViG_2510065051_000001-2510065051-2510274505__D3-118
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.67 35.0 4.13e-01 75.0% 73.8%
3ci0I00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.63 34.0 4.07e-01 75.8% 78.3%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.59 34.0 2.95e-01 75.8% 36.2%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 34.0 3.87e-01 77.4% 76.9%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.56 48.0 4.16e-01 92.7% 74.1%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.54 45.0 3.46e-01 90.3% 93.9%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 4.07e-01 84.7% 82.0%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 47.0 3.81e-01 95.2% 67.5%
4afkA00 2.40.160.100 Mainly Beta › Beta Barrel › Porin › 0.53 47.0 3.25e-01 96.8% 50.9%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.53 42.0 3.93e-01 84.7% 85.8%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.52 44.0 3.80e-01 89.5% 81.7%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 45.0 4.20e-01 91.1% 95.9%
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.51 46.0 4.27e-01 100.0% 87.8%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.51 45.0 3.56e-01 99.2% 97.4%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 38.0 4.11e-01 84.7% 93.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5019455 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 50.0 4.20e-01 75.0% 45.6%
2659065 265.1.1.3 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › AP205_coat 0.59 42.0 4.52e-01 77.4% 89.1%
3675745 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.59 32.0 3.97e-01 73.4% 89.0%
3684690 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.56 31.0 3.53e-01 73.4% 72.2%
None — 0.56 46.0 3.54e-01 89.5% 94.2%
3512269 79.1.1.16 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 0.55 31.0 3.61e-01 77.4% 75.6%
1943 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.55 46.0 3.49e-01 90.3% 93.5%
3173251 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.55 44.0 3.97e-01 85.5% 84.1%
3933957 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.54 43.0 3.96e-01 83.9% 81.2%
4634707 327.16.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin 0.54 47.0 3.79e-01 95.2% 83.7%
3277579 11.13.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like 0.54 46.0 3.46e-01 91.9% 96.0%
4020798 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.54 46.0 3.69e-01 92.7% 72.2%
3484227 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.53 43.0 3.86e-01 85.5% 73.5%
3100974 5084.5.3.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.53 41.0 3.45e-01 81.5% 85.1%
3326287 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.53 41.0 4.25e-01 83.9% 89.2%
4945299 512.1.1.5 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd 0.52 39.0 3.96e-01 90.3% 79.2%
3386616 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 34.0 3.51e-01 85.5% 68.3%
3808882 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.52 41.0 3.74e-01 85.5% 80.0%
3787225 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.52 43.0 3.68e-01 87.9% 71.8%
4984404 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.52 46.0 4.42e-01 100.0% 89.9%
1734926 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.52 29.0 3.48e-01 79.0% 86.7%
4113088 5084.1.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane 0.51 42.0 3.60e-01 89.5% 95.1%
3645656 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.51 31.0 3.68e-01 71.8% 93.8%
D2 high residues 142-251
PDB
Domain cluster: rep: IMGVR_UViG_2510065051_000001-2510065051-2510274505__D123-220
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.59 42.0 4.21e-01 100.0% 72.3%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.55 34.0 3.65e-01 92.7% 71.1%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 23.0 2.90e-01 85.5% 61.2%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 24.0 3.01e-01 83.6% 65.2%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 24.0 2.88e-01 82.7% 62.1%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 3.07e-01 84.5% 44.9%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.50 42.0 4.22e-01 100.0% 88.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5019455 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.90 79.0 6.32e-01 100.0% 51.8%
5038450 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.80 73.0 5.42e-01 100.0% 47.4%
4997494 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.79 71.0 5.59e-01 100.0% 48.6%
4955607 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.78 66.0 5.26e-01 99.1% 47.0%
5036533 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.77 67.0 5.23e-01 100.0% 45.8%
5043905 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.76 65.0 5.10e-01 98.2% 44.9%
4932331 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.73 48.0 5.08e-01 99.1% 75.8%
3510576 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.72 46.0 5.22e-01 99.1% 88.7%
4930594 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.66 39.0 4.50e-01 96.4% 84.0%
5052639 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.63 57.0 4.51e-01 100.0% 53.9%
5078886 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 50.0 5.06e-01 98.2% 88.2%
4302456 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.57 38.0 4.15e-01 95.5% 83.3%
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 26.0 3.30e-01 84.5% 81.0%
3546306 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.52 36.0 3.88e-01 92.7% 83.2%
4928736 331.19.1.0 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.52 44.0 4.13e-01 100.0% 74.3%
4291626 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.51 35.0 3.79e-01 92.7% 83.2%