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YP_010772554.1

Arc-Vir

NC_074647__YP_010772554.1__QIT44-gp06__00006

Identity

Accession:
NC_074647 ↗
Protein ID:
YP_010772554.1 ↗
Kingdom:
archaea

Quality

88.3 mean pLDDT

Taxonomy

Trapavirae› Saleviricota› Huolimaviricetes› Haloruvirales› Pleolipoviridae› Gammapleolipovirus› Haloarcula_virus_Hardyhisp2

TaxID: 2811386

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-198
PDB
Domain cluster: rep: NC_047904.1__YP_009796765.1__HOS57_gp43__00043__D4-146_199-214
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qrvA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.72 69.0 6.75e-01 100.0% 98.6%
2aefA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.71 41.0 5.37e-01 92.9% 98.3%
2dpmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 46.0 5.11e-01 96.4% 81.9%
2c7rA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 66.0 6.50e-01 100.0% 93.4%
1dctA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 59.0 6.25e-01 97.0% 99.4%
3abiA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 48.0 5.09e-01 98.5% 79.1%
3egiA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 51.0 5.18e-01 96.4% 77.4%
3on5B02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 50.0 5.57e-01 100.0% 94.3%
4c4oA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 38.0 4.66e-01 92.9% 87.7%
2c54A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 51.0 5.34e-01 97.0% 88.0%
3sqlA02 3.40.50.10870 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycosyl hydrolase family 3 0.64 42.0 4.71e-01 98.0% 83.7%
3ew7A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 50.0 5.35e-01 98.5% 93.6%
3twoA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 42.0 4.76e-01 88.3% 88.2%
2bfwA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.62 45.0 4.62e-01 100.0% 77.2%
2iyeA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 41.0 4.50e-01 97.5% 82.8%
3d1lB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 44.0 4.80e-01 98.5% 89.4%
3vtfA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 34.0 3.40e-01 93.4% 51.9%
1x42A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.61 43.0 4.99e-01 99.0% 98.6%
2iuyA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.60 44.0 4.60e-01 97.5% 81.8%
3qnmA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.60 41.0 4.84e-01 95.9% 97.2%
3ed5A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.60 42.0 4.82e-01 97.5% 95.2%
2w43A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.59 42.0 4.85e-01 97.5% 99.3%
6oz7B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 54.0 5.11e-01 98.5% 91.5%
2qcvA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 54.0 4.80e-01 99.0% 85.3%
1o89A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 41.0 4.49e-01 88.3% 85.6%
3umcA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 42.0 4.73e-01 98.0% 95.5%
4e21A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 42.0 4.41e-01 98.0% 81.7%
1txgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 47.0 4.90e-01 99.0% 92.8%
2vq3A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 43.0 4.53e-01 99.0% 84.0%
5l4lA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 49.0 4.34e-01 98.0% 64.7%
1g38A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 51.0 4.86e-01 94.4% 84.3%
5g6rA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 43.0 4.72e-01 94.9% 97.5%
2vsnA02 3.40.50.11380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 49.0 4.70e-01 100.0% 80.2%
3eyaA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.57 37.0 4.10e-01 99.0% 81.4%
1u7zC00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.56 52.0 5.06e-01 100.0% 95.9%
3egeA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 50.0 4.59e-01 94.9% 88.3%
1rljA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 37.0 4.33e-01 93.9% 100.0%
2xdqA03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 29.0 3.57e-01 87.8% 79.8%
7bovA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 50.0 5.03e-01 99.0% 99.5%
3ia7A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 50.0 4.75e-01 99.5% 98.7%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 46.0 4.85e-01 100.0% 99.5%
4zemA02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.53 38.0 4.12e-01 74.1% 94.6%
6j31B01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 49.0 4.71e-01 99.0% 97.8%
5cgzA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.53 48.0 4.53e-01 98.5% 97.9%
3e7pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 47.0 4.34e-01 97.0% 81.8%
3v3tA01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.51 46.0 4.60e-01 100.0% 94.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4588619 2003.1.5.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.84 80.0 6.03e-01 100.0% 99.8%
4416759 2003.1.5.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.78 74.0 6.04e-01 100.0% 88.2%
4668963 2003.1.8.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like 0.75 34.0 5.13e-01 92.4% 100.0%
4355891 2003.1.8.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like › MurD-like_N 0.72 35.0 4.91e-01 95.9% 92.0%
5003291 2003.1.5.70 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_15 0.69 54.0 5.27e-01 94.4% 74.0%
4379554 2003.1.1.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CbiJ 0.67 35.0 4.30e-01 76.1% 77.6%
3840069 2003.1.5.62 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.67 47.0 4.52e-01 70.1% 75.5%
5075540 2003.1.1.68 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › XdhC_C 0.67 50.0 5.61e-01 99.0% 98.1%
5045598 2003.1.5.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.67 59.0 4.59e-01 92.4% 62.8%
4946501 2003.1.1.68 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › XdhC_C 0.66 49.0 5.52e-01 97.5% 98.7%
4954395 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.65 46.0 5.31e-01 98.5% 99.3%
4188964 2003.1.5.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.65 47.0 4.76e-01 98.5% 75.3%
5043556 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.64 37.0 4.57e-01 87.8% 88.8%
3183759 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.62 47.0 4.10e-01 78.2% 61.4%
3697129 2003.1.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.61 43.0 4.76e-01 86.8% 89.7%
3694333 2003.1.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.61 41.0 4.44e-01 85.3% 80.0%
4997915 7512.1.1.32 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.60 42.0 4.28e-01 99.0% 72.1%
4099268 2003.1.1.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_2 0.59 43.0 4.53e-01 99.0% 82.8%
4973751 2003.1.1.72 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.58 54.0 4.64e-01 98.5% 72.8%
4022205 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.58 54.0 4.57e-01 99.0% 63.8%
3315603 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.58 44.0 4.38e-01 98.5% 75.1%
4021806 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.57 49.0 4.24e-01 89.3% 64.9%
4585057 2003.1.5.62 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.57 51.0 4.73e-01 94.4% 78.3%
5072068 2003.1.5.112 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF268 0.57 47.0 4.56e-01 94.9% 78.6%
2429416 2003.1.1.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ELFV_dehydrog 0.56 41.0 3.85e-01 96.4% 61.8%
None — 0.56 43.0 4.68e-01 94.9% 94.5%
3695166 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.56 48.0 4.02e-01 89.3% 58.1%
3729947 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.56 48.0 4.19e-01 89.3% 66.1%
None — 0.56 49.0 4.31e-01 98.5% 65.0%
2602775 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.55 44.0 4.76e-01 84.3% 98.8%
1575356 2007.1.2.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.55 31.0 3.96e-01 93.4% 95.5%
5029171 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.54 50.0 4.39e-01 97.5% 68.7%
4019511 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.54 50.0 4.26e-01 97.0% 78.0%
3188776 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.53 49.0 4.14e-01 97.0% 73.9%
3696524 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.53 49.0 4.10e-01 97.0% 78.7%
4947752 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 46.0 4.70e-01 96.4% 93.3%
4974380 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.52 45.0 4.36e-01 95.4% 80.0%
3696680 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.52 48.0 4.07e-01 97.0% 76.1%
224054 3598.1.1.0 ↗ a/b three-layered sandwiches › Cellulose Synthase Subunit B a/b domain › Cellulose Synthase Subunit B a/b domain › Cellulose Synthase Subunit B a/b domain 0.51 28.0 3.47e-01 97.5% 85.0%