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YP_010772565.1

Arc-Vir

NC_074647__YP_010772565.1__QIT44-gp17__00017

Identity

Accession:
NC_074647 ↗
Protein ID:
YP_010772565.1 ↗
Kingdom:
archaea

Quality

76.8 mean pLDDT

Taxonomy

Trapavirae› Saleviricota› Huolimaviricetes› Haloruvirales› Pleolipoviridae› Gammapleolipovirus› Haloarcula_virus_Hardyhisp2

TaxID: 2811386

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-65
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 52.0 4.47e-01 80.0% 87.2%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.66 47.0 4.86e-01 91.7% 80.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 5.54e-01 100.0% 86.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.61e-01 100.0% 93.7%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 46.0 3.27e-01 78.3% 60.9%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 46.0 3.84e-01 80.0% 92.4%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.62 49.0 4.56e-01 100.0% 68.8%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.62 46.0 4.80e-01 91.7% 88.9%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 45.0 3.49e-01 80.0% 68.5%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.90e-01 95.0% 98.6%
2dsyD00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 40.0 3.69e-01 71.7% 50.6%
1mr1D00 3.10.390.10 Alpha Beta › Roll › SAND domain › SAND domain-like 0.61 49.0 4.23e-01 90.0% 72.9%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.61 45.0 4.32e-01 95.0% 69.0%
1y3tA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 47.0 3.59e-01 90.0% 68.8%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 5.06e-01 90.0% 93.4%
1q25A03 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.60 47.0 3.67e-01 91.7% 72.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.59e-01 95.0% 75.0%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.59 43.0 4.19e-01 95.0% 69.0%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 49.0 4.21e-01 90.0% 86.2%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.11e-01 93.3% 76.2%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 50.0 4.04e-01 100.0% 47.6%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.85e-01 100.0% 96.6%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 48.0 3.84e-01 96.7% 81.2%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.58 49.0 4.56e-01 98.3% 91.1%
7sulB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 2.84e-01 88.3% 27.2%
3uh0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 48.0 3.92e-01 100.0% 69.4%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.85e-01 88.3% 42.9%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.57 42.0 4.07e-01 80.0% 87.1%
3pufL00 2.40.128.680 Mainly Beta › Beta Barrel › Lipocalin › 0.57 40.0 3.24e-01 75.0% 55.2%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.56 41.0 3.35e-01 81.7% 78.9%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 43.0 2.79e-01 88.3% 23.1%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.36e-01 93.3% 96.2%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.18e-01 93.3% 78.9%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.53 43.0 3.28e-01 98.3% 73.4%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 40.0 3.09e-01 90.0% 40.6%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.59e-01 88.3% 92.7%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.51 40.0 3.27e-01 95.0% 80.5%
2aegA01 2.40.10.510 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 41.0 3.98e-01 93.3% 100.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3727172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.51e-01 91.7% 97.1%
4931822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.27e-01 100.0% 78.5%
3990293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 44.0 4.63e-01 76.7% 74.5%
3706998 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.26e-01 100.0% 85.0%
4659299 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 50.0 5.04e-01 95.0% 81.7%
3785599 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 54.0 3.31e-01 88.3% 26.8%
3451280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 3.93e-01 100.0% 34.8%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 57.0 5.62e-01 100.0% 90.8%
3790978 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 59.0 5.59e-01 100.0% 90.0%
3629145 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 56.0 5.49e-01 95.0% 92.3%
3875413 63.1.1.1 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR 0.64 51.0 3.34e-01 91.7% 38.2%
3515869 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 55.0 3.41e-01 98.3% 25.8%
3304627 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 52.0 5.40e-01 98.3% 98.2%
4446791 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 55.0 5.38e-01 100.0% 90.8%
3779701 912.1.1.8 ↗ few secondary structure elements › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › CIMR 0.63 50.0 3.03e-01 91.7% 22.6%
3386194 241.12.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.63 53.0 4.00e-01 100.0% 83.0%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 56.0 5.44e-01 100.0% 90.8%
3989307 220.1.1.88 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF956 0.62 51.0 4.24e-01 93.3% 65.5%
3189510 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 46.0 4.70e-01 81.7% 83.3%
3652778 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 54.0 3.33e-01 98.3% 26.2%
3988065 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 47.0 4.36e-01 83.3% 65.3%
3218647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.87e-01 91.7% 88.6%
3894830 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 51.0 3.25e-01 95.0% 29.0%
4528028 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.60 53.0 3.68e-01 98.3% 48.0%
4018760 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 45.0 4.22e-01 81.7% 72.0%
3215393 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.60 51.0 3.85e-01 96.7% 82.7%
3570230 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 53.0 4.60e-01 98.3% 70.0%
3932365 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 48.0 3.00e-01 90.0% 35.8%
3975862 220.1.1.104 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.59 47.0 4.32e-01 90.0% 78.8%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.59 48.0 4.75e-01 96.7% 85.9%
567 4.1.1.48 ↗ beta barrels › SH3 › SH3 › SH3 › DHFR_2 0.59 48.0 4.89e-01 100.0% 98.2%
4961572 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 46.0 3.70e-01 91.7% 88.5%
3948209 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.45e-01 100.0% 74.7%
3800334 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 42.0 3.38e-01 98.3% 38.5%
4974761 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.56 40.0 2.62e-01 78.3% 32.0%
3789624 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.56 41.0 3.24e-01 81.7% 68.6%
3822673 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 31.0 3.62e-01 75.0% 80.0%
4482319 5.1.11.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.56 45.0 2.68e-01 91.7% 20.8%
3255196 4970.1.1.28 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › SPC25 0.54 45.0 3.88e-01 98.3% 82.5%
3336415 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 43.0 2.76e-01 90.0% 23.9%
3837308 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.53 41.0 2.71e-01 88.3% 32.5%
3244230 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 36.0 2.86e-01 75.0% 89.3%
3969902 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 43.0 3.06e-01 96.7% 96.5%
3943758 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 41.0 3.00e-01 98.3% 40.0%