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YP_010772570.1

Arc-Vir

NC_074647__YP_010772570.1__QIT44-gp22__00022

Identity

Accession:
NC_074647 ↗
Protein ID:
YP_010772570.1 ↗
Kingdom:
archaea

Quality

83.2 mean pLDDT

Taxonomy

Trapavirae› Saleviricota› Huolimaviricetes› Haloruvirales› Pleolipoviridae› Gammapleolipovirus› Haloarcula_virus_Hardyhisp2

TaxID: 2811386

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-98
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.68 59.0 4.42e-01 96.6% 42.7%
3k9dA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.66 48.0 3.21e-01 98.3% 18.2%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.64 51.0 4.44e-01 87.9% 62.5%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 54.0 3.42e-01 100.0% 21.5%
3tviA01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.63 54.0 3.55e-01 100.0% 86.7%
3c24A02 1.10.3640.10 Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal 0.62 45.0 3.79e-01 77.6% 52.0%
2ebfX02 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.60 45.0 3.40e-01 79.3% 37.8%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.60 52.0 4.51e-01 98.3% 93.3%
1pu6A01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.60 53.0 4.53e-01 100.0% 88.3%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.58 44.0 3.87e-01 82.8% 95.7%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 45.0 3.87e-01 84.5% 80.9%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.58 48.0 4.10e-01 100.0% 55.4%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.56 46.0 3.31e-01 91.4% 65.1%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 41.0 3.10e-01 79.3% 93.5%
3v53E00 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.55 44.0 3.77e-01 98.3% 52.9%
1dk8A02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.55 45.0 4.10e-01 98.3% 95.3%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 44.0 2.74e-01 96.6% 33.1%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 45.0 4.34e-01 91.4% 94.0%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 46.0 3.36e-01 100.0% 55.1%
1z6mA02 1.10.1200.90 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › DsbA-like domain 0.54 37.0 3.73e-01 70.7% 68.9%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 42.0 3.90e-01 93.1% 67.1%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.54 36.0 3.73e-01 70.7% 78.6%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.54 47.0 3.99e-01 100.0% 78.4%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.54 45.0 4.14e-01 96.6% 85.0%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.53 42.0 3.41e-01 93.1% 67.2%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 45.0 3.67e-01 100.0% 80.9%
1musA01 1.10.246.40 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Tn5 transposase; domain 1 0.52 35.0 3.44e-01 82.8% 62.1%
6gwuD00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.52 38.0 2.78e-01 86.2% 55.4%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839206 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.67 60.0 5.41e-01 100.0% 76.2%
2983211 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.66 45.0 3.66e-01 91.4% 36.8%
3063543 109.23.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 0.64 51.0 3.98e-01 89.7% 46.6%
3576492 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 53.0 4.64e-01 94.8% 72.2%
3839024 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.62 46.0 3.14e-01 79.3% 57.1%
3628487 109.4.1.1154 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS7_N 0.61 46.0 3.12e-01 82.8% 21.8%
5012559 6028.1.1.0 ↗ alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.61 50.0 4.68e-01 94.8% 86.7%
3290637 109.3.1.158 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF1266 0.60 49.0 3.44e-01 100.0% 27.5%
1443915 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.60 48.0 3.73e-01 91.4% 68.3%
4577554 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.60 52.0 4.48e-01 100.0% 68.4%
3719809 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.60 50.0 4.31e-01 100.0% 68.0%
3329713 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.59 42.0 4.10e-01 86.2% 67.7%
5070580 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.59 41.0 4.11e-01 72.4% 71.2%
5039179 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.59 40.0 3.93e-01 70.7% 66.2%
3538309 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.59 41.0 3.63e-01 70.7% 58.7%
3657981 198.1.1.16 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 0.59 51.0 4.67e-01 100.0% 75.0%
1442899 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.59 47.0 3.65e-01 91.4% 66.9%
3996406 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.58 44.0 4.18e-01 82.8% 71.4%
54315 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.58 44.0 3.84e-01 82.8% 65.6%
3730252 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.57 40.0 4.05e-01 86.2% 75.0%
4594328 181.1.1.2 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › FlhF_N 0.57 43.0 3.95e-01 81.0% 62.7%
4930483 604.17.1.1 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C 0.56 41.0 4.31e-01 82.8% 92.0%
3465994 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.56 44.0 4.15e-01 98.3% 70.7%
3654606 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.56 39.0 3.57e-01 72.4% 62.7%
3615313 1128.1.1.2 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.56 42.0 3.86e-01 82.8% 95.0%
3596071 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.55 45.0 3.86e-01 94.8% 76.0%
3654814 592.1.1.9 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26051 0.55 47.0 4.13e-01 100.0% 91.1%
4088578 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.54 42.0 4.10e-01 89.7% 81.5%
3781595 1134.1.1.7 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.54 41.0 3.95e-01 84.5% 71.4%
4961846 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.53 46.0 3.31e-01 100.0% 33.7%
5043732 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.53 36.0 3.40e-01 72.4% 57.1%
3438235 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.52 37.0 3.57e-01 77.6% 64.3%
3952621 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.51 40.0 3.93e-01 100.0% 82.6%