YP_010772639.1

Arc-Vir

NC_074651__YP_010772639.1__QIT48-gp01__00001

Identity

Accession:: NC_074651 ↗
Protein ID:: YP_010772639.1 ↗
Kingdom:: archaea

Quality

89.5 mean pLDDT

Taxonomy

Helvetiavirae› Dividoviricota› Laserviricetes› Halopanivirales› Simuloviridae› Yingchengvirus› Haloterrigena_jeotgali_icosahedral_virus_1

TaxID: 2766528

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-66

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF26438.1 best	DUF8108_N	64.0	1.10e-17	100.0%	82.6%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1f02T00	4.10.820.10	Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain	0.71	39.0	3.92e-01	75.0%	51.5%
5yk4A04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.55	42.0	3.40e-01	85.9%	39.7%
7kfuC02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.55	39.0	2.73e-01	76.6%	71.2%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3611700	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.69	56.0	3.57e-01	100.0%	19.0%
3919034	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.68	50.0	3.29e-01	78.1%	20.0%
3480783	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.68	49.0	3.07e-01	76.6%	46.9%
4410759	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.66	47.0	3.90e-01	92.2%	42.6%
4325826	225.1.1.27 ↗	a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › PF26329	0.65	41.0	2.70e-01	78.1%	15.8%
3478961	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.64	48.0	2.98e-01	79.7%	15.9%
5033276	101.1.2.14 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_5	0.62	49.0	3.73e-01	87.5%	66.9%
4996058	101.1.2.30 ↗	alpha arrays › HTH › HTH › winged helix domain › TrmB	0.61	44.0	3.71e-01	79.7%	67.0%
3726808	4163.1.1.1 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5	0.57	41.0	3.00e-01	76.6%	35.6%
4968065	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	42.0	3.26e-01	81.2%	58.1%
3587282	142.1.1.10 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16	0.57	31.0	3.03e-01	71.9%	41.4%
3547409	604.1.1.153 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455	0.56	43.0	3.11e-01	100.0%	28.0%
4980177	101.1.2.150 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_45	0.55	44.0	3.64e-01	89.1%	93.3%
5017399	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.54	36.0	2.78e-01	70.3%	29.3%
5029016	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.53	36.0	2.88e-01	79.7%	31.4%
3940660	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.52	45.0	2.65e-01	98.4%	42.4%
3286591	101.1.2.612 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27059	0.52	37.0	3.00e-01	81.2%	54.4%