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YP_010772832.1
Arc-VirNC_074656__YP_010772832.1__QIT54-gp02__00002
Identity
- Accession:
- NC_074656 ↗
- Protein ID:
- YP_010772832.1 ↗
- Kingdom:
- archaea
Quality
77.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-47
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.78 | 65.0 | 5.07e-01 | 100.0% | 50.0% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.73 | 63.0 | 5.26e-01 | 100.0% | 90.2% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 61.0 | 5.01e-01 | 100.0% | 83.1% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.72 | 60.0 | 5.26e-01 | 100.0% | 62.5% |
| 1wgrA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.71 | 52.0 | 4.49e-01 | 100.0% | 47.6% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.71 | 56.0 | 4.96e-01 | 100.0% | 58.3% |
| 3klqA01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.70 | 59.0 | 4.41e-01 | 100.0% | 37.0% |
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 53.0 | 4.22e-01 | 84.8% | 45.3% |
| 4mt1A07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.68 | 55.0 | 4.48e-01 | 100.0% | 86.3% |
| 8gk4C02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.68 | 54.0 | 4.30e-01 | 89.1% | 100.0% |
| 2h5eA03 | 3.30.70.3280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III | 0.67 | 57.0 | 4.16e-01 | 100.0% | 48.2% |
| 2hw4A01 | 3.50.20.20 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus | 0.66 | 56.0 | 4.34e-01 | 100.0% | 64.5% |
| 1rylA00 | 3.40.1760.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family | 0.66 | 53.0 | 3.85e-01 | 100.0% | 99.4% |
| 1lnzA01 | 2.70.210.12 | Mainly Beta › Distorted Sandwich › Spo0b-associated Gtp-binding Protein; Chain: A, › GTP1/OBG domain | 0.65 | 56.0 | 3.92e-01 | 100.0% | 41.7% |
| 2f4eB00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.65 | 55.0 | 4.07e-01 | 100.0% | 64.6% |
| 2je8A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.65 | 50.0 | 3.34e-01 | 100.0% | 21.4% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.65 | 54.0 | 4.90e-01 | 100.0% | 69.7% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 54.0 | 3.82e-01 | 97.8% | 55.0% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.64 | 53.0 | 4.73e-01 | 100.0% | 87.3% |
| 1u8sA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 49.0 | 4.33e-01 | 100.0% | 95.2% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.62 | 49.0 | 4.37e-01 | 100.0% | 97.5% |
| 4dipH00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.62 | 53.0 | 4.00e-01 | 100.0% | 67.2% |
| 3dadA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.62 | 51.0 | 3.12e-01 | 95.7% | 22.8% |
| 1wkbA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.62 | 48.0 | 3.08e-01 | 84.8% | 95.6% |
| 3fdjA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.61 | 46.0 | 4.92e-01 | 100.0% | 100.0% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 49.0 | 4.24e-01 | 100.0% | 95.2% |
| 2ff4A03 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.61 | 51.0 | 4.08e-01 | 100.0% | 94.9% |
| 5x6vF00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.61 | 44.0 | 3.37e-01 | 80.4% | 82.2% |
| 1zczA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.60 | 47.0 | 3.74e-01 | 97.8% | 38.5% |
| 2x3lB03 | 3.90.105.10 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 | 0.60 | 46.0 | 4.35e-01 | 95.7% | 69.5% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.60 | 50.0 | 4.60e-01 | 100.0% | 79.4% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 49.0 | 3.51e-01 | 97.8% | 80.9% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.59 | 41.0 | 2.86e-01 | 71.7% | 35.8% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 41.0 | 3.27e-01 | 78.3% | 86.0% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.58 | 50.0 | 4.15e-01 | 100.0% | 85.7% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 45.0 | 3.41e-01 | 100.0% | 48.6% |
| 3rosA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 45.0 | 2.92e-01 | 100.0% | 33.2% |
| 2vycA04 | 3.90.100.10 | Alpha Beta › Alpha-Beta Complex › Ornithine Decarboxylase; Chain A, domain 4 › Orn/Lys/Arg decarboxylase, C-terminal domain | 0.53 | 43.0 | 3.31e-01 | 100.0% | 52.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3184485 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.77 | 65.0 | 5.04e-01 | 100.0% | 42.6% |
| 3595127 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.76 | 67.0 | 5.83e-01 | 100.0% | 100.0% |
| 4193755 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.76 | 68.0 | 5.75e-01 | 100.0% | 94.7% |
| 4045503 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.75 | 66.0 | 5.64e-01 | 100.0% | 94.7% |
| 4399086 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.73 | 64.0 | 5.23e-01 | 100.0% | 84.7% |
| 4400436 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.73 | 61.0 | 4.88e-01 | 100.0% | 95.0% |
| 4534213 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.72 | 63.0 | 5.15e-01 | 100.0% | 83.5% |
| 5004549 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.72 | 61.0 | 4.71e-01 | 100.0% | 88.9% |
| 3423236 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 59.0 | 5.06e-01 | 95.7% | 60.0% |
| 4207617 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.71 | 61.0 | 5.37e-01 | 100.0% | 92.9% |
| 4997823 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.70 | 57.0 | 4.26e-01 | 100.0% | 97.8% |
| 4100238 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.69 | 59.0 | 4.32e-01 | 100.0% | 97.7% |
| 3622513 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 60.0 | 5.53e-01 | 100.0% | 95.0% |
| 4595959 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.69 | 58.0 | 4.96e-01 | 100.0% | 100.0% |
| 3660070 | 224.1.1.6 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › MPK1_gelsolin_C | 0.69 | 46.0 | 3.57e-01 | 100.0% | 30.5% |
| 4433350 | 304.28.1.13 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › MMPL | 0.69 | 57.0 | 4.66e-01 | 100.0% | 100.0% |
| 3216926 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 61.0 | 4.21e-01 | 100.0% | 36.7% |
| 3839805 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.68 | 55.0 | 4.43e-01 | 100.0% | 95.2% |
| 3597641 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.68 | 57.0 | 4.95e-01 | 100.0% | 98.7% |
| 4509594 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.67 | 56.0 | 4.71e-01 | 100.0% | 88.2% |
| 3226061 | 304.163.1.1 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 | 0.67 | 53.0 | 4.73e-01 | 97.8% | 96.0% |
| 4031688 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.67 | 53.0 | 4.38e-01 | 100.0% | 98.0% |
| 3277566 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 54.0 | 4.75e-01 | 100.0% | 97.3% |
| 3598887 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 53.0 | 4.72e-01 | 100.0% | 98.7% |
| 4332439 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.65 | 55.0 | 4.55e-01 | 100.0% | 84.4% |
| 5003398 | 2003.1.5.96 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MetW | 0.65 | 50.0 | 3.20e-01 | 87.0% | 61.7% |
| 5034209 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 55.0 | 5.11e-01 | 100.0% | 75.0% |
| 3621028 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.64 | 45.0 | 4.06e-01 | 100.0% | 51.4% |
| 3851439 | 5.1.4.612 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Med16_N, Med16_bridge, Med16_C | 0.64 | 51.0 | 2.84e-01 | 89.1% | 27.8% |
| 3935404 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.64 | 54.0 | 4.41e-01 | 100.0% | 51.1% |
| 3862518 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.63 | 49.0 | 4.73e-01 | 100.0% | 76.4% |
| 3629469 | 304.4.1.53 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 | 0.63 | 49.0 | 4.27e-01 | 100.0% | 87.1% |
| 3236581 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.62 | 48.0 | 4.30e-01 | 95.7% | 100.0% |
| 5015962 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.61 | 45.0 | 4.42e-01 | 100.0% | 76.0% |
| 3998576 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 48.0 | 3.40e-01 | 100.0% | 25.1% |
| 3798311 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.60 | 43.0 | 4.15e-01 | 100.0% | 65.5% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 47.0 | 4.69e-01 | 100.0% | 92.0% |
| 3998356 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 47.0 | 4.73e-01 | 100.0% | 97.8% |
| 3932100 | 221.7.1.3 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL | 0.56 | 48.0 | 3.74e-01 | 100.0% | 45.0% |
| 3405854 | 221.7.1.3 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL | 0.55 | 46.0 | 3.66e-01 | 100.0% | 45.0% |
| 3270169 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 44.0 | 3.76e-01 | 100.0% | 51.8% |
| 3737549 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.50 | 43.0 | 2.76e-01 | 100.0% | 82.7% |