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YP_010772852.1

Arc-Vir

NC_074656__YP_010772852.1__QIT54-gp22__00022

Identity

Accession:
NC_074656 ↗
Protein ID:
YP_010772852.1 ↗
Kingdom:
archaea

Quality

76.0 mean pLDDT

Taxonomy

Thaspiviridae› Nitmarvirus› Nitrosopumilus_spindle-shaped_virus

TaxID: 2508184

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-124
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.76 69.0 5.96e-01 98.7% 69.3%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.75 67.0 6.15e-01 97.4% 81.4%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.74 66.0 5.75e-01 97.4% 77.7%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.74 66.0 5.46e-01 98.7% 69.7%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.74 66.0 6.01e-01 98.7% 78.8%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 65.0 5.24e-01 100.0% 61.5%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 64.0 5.81e-01 100.0% 79.6%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.70 49.0 5.57e-01 84.2% 100.0%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.68 51.0 5.26e-01 96.1% 85.9%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.67 51.0 5.25e-01 96.1% 86.1%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 41.0 4.49e-01 75.0% 84.7%
4wk5A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 52.0 3.74e-01 97.4% 47.3%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.63 51.0 4.92e-01 96.1% 78.2%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.60 44.0 3.63e-01 77.6% 62.7%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.60 43.0 4.77e-01 77.6% 96.7%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 48.0 4.12e-01 89.5% 83.6%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.59 51.0 4.23e-01 100.0% 69.5%
3ibyD02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 41.0 3.99e-01 76.3% 84.5%
2qgmA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.57 44.0 3.90e-01 85.5% 75.9%
2yinA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.54 49.0 4.09e-01 100.0% 91.4%
4g1tA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 45.0 3.80e-01 100.0% 56.1%
4rg6A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 44.0 4.46e-01 100.0% 88.3%
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.53 48.0 4.07e-01 100.0% 87.7%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.53 42.0 4.11e-01 92.1% 85.2%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.53 42.0 4.20e-01 88.2% 92.3%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.52 45.0 4.00e-01 97.4% 79.8%
3o4zA02 1.25.40.720 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain 0.52 45.0 3.42e-01 100.0% 40.2%
4l9pA00 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.51 42.0 2.81e-01 97.4% 21.5%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.50 41.0 3.92e-01 93.4% 78.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4341260 148.1.3.257 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF494 0.77 67.0 6.10e-01 94.7% 75.0%
4485359 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.75 66.0 6.15e-01 98.7% 84.2%
3458511 371.1.1.7 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › zf-RVT 0.74 61.0 4.81e-01 92.1% 73.3%
4507907 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.74 63.0 6.14e-01 94.7% 97.6%
4987113 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.73 58.0 5.92e-01 94.7% 88.0%
4987957 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.69 55.0 5.59e-01 94.7% 89.3%
4979817 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.69 57.0 5.68e-01 100.0% 90.0%
4994194 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.68 54.0 5.50e-01 86.8% 100.0%
5057411 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.67 51.0 5.08e-01 96.1% 78.8%
4961006 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.67 55.0 5.53e-01 90.8% 100.0%
3197542 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.64 55.0 3.43e-01 100.0% 79.2%
5001078 633.2.1.0 ↗ alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.64 51.0 4.73e-01 85.5% 87.4%
4375217 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.60 30.0 2.96e-01 78.9% 43.8%
3648643 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 49.0 4.59e-01 94.7% 84.2%
3613815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 51.0 3.59e-01 97.4% 51.9%
3784553 592.1.1.6 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.55 43.0 4.21e-01 97.4% 77.6%
4024271 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.54 40.0 3.42e-01 81.6% 73.3%
3478660 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.54 45.0 4.17e-01 90.8% 76.8%
3291544 601.1.1.55 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF7134 0.54 44.0 3.69e-01 100.0% 89.7%
2073547 621.1.1.2 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.52 38.0 4.04e-01 84.2% 89.2%
3989289 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.50 36.0 3.62e-01 97.4% 72.5%