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YP_010772859.1
Arc-VirNC_074656__YP_010772859.1__QIT54-gp29__00029
Identity
- Accession:
- NC_074656 ↗
- Protein ID:
- YP_010772859.1 ↗
- Kingdom:
- archaea
Quality
74.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 38-92
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y8nB01 | 2.20.70.100 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.71 | 41.0 | 4.59e-01 | 96.4% | 73.8% |
| 2c47A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 45.0 | 4.12e-01 | 76.4% | 98.6% |
| 2c0nA00 | 3.90.550.40 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.62 | 43.0 | 2.92e-01 | 72.7% | 64.7% |
| 2jn4A00 | 2.40.50.240 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like | 0.60 | 51.0 | 4.86e-01 | 100.0% | 84.8% |
| 2xfmA00 | 2.170.260.10 | Mainly Beta › Beta Complex › paz domain › paz domain | 0.54 | 40.0 | 3.19e-01 | 81.8% | 76.7% |
| 2jx8A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 35.0 | 3.74e-01 | 98.2% | 78.7% |
| 3p5jB01 | 2.20.25.530 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 43.0 | 3.97e-01 | 94.5% | 91.9% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.51 | 36.0 | 3.31e-01 | 78.2% | 64.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5067458 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.87 | 61.0 | 6.10e-01 | 72.7% | 92.7% |
| 4967822 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 55.0 | 6.20e-01 | 72.7% | 100.0% |
| 3218844 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 51.0 | 4.34e-01 | 81.8% | 51.1% |
| 4397965 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 44.0 | 3.27e-01 | 83.6% | 27.9% |
| 4475754 | 4076.2.1.5 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MRNIP | 0.60 | 47.0 | 4.46e-01 | 85.5% | 76.9% |
| 4945330 | 4294.1.1.11 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › ResIII | 0.60 | 45.0 | 4.22e-01 | 100.0% | 65.7% |
| 4111189 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 42.0 | 4.12e-01 | 76.4% | 78.3% |
| 4263982 | 375.1.1.302 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP | 0.59 | 46.0 | 4.69e-01 | 87.3% | 90.9% |
| 3578444 | 375.1.1.184 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B | 0.59 | 49.0 | 4.44e-01 | 98.2% | 98.8% |
| 3934695 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.57 | 49.0 | 4.15e-01 | 100.0% | 70.5% |
| 3237030 | 2.1.1.89 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term | 0.56 | 39.0 | 3.18e-01 | 72.7% | 85.2% |
| 3974846 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.56 | 44.0 | 3.56e-01 | 96.4% | 43.6% |
| 3931349 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.54 | 43.0 | 3.38e-01 | 96.4% | 61.2% |
| 3232445 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 39.0 | 3.93e-01 | 100.0% | 80.0% |
| 3406773 | 241.10.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 | 0.54 | 43.0 | 3.99e-01 | 100.0% | 70.0% |
| 3777334 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.53 | 47.0 | 3.38e-01 | 100.0% | 34.6% |
| 3936491 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.50 | 42.0 | 3.50e-01 | 94.5% | 55.0% |
| 3932501 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.50 | 42.0 | 3.32e-01 | 100.0% | 96.2% |
| 3676414 | 206.1.2.2 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K | 0.50 | 40.0 | 2.93e-01 | 94.5% | 85.7% |