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NC_074662.1__YP_010773350.1__QIT84_gp057__00057

Bact-Vir

NC_074662.1__YP_010773350.1__QIT84_gp057__00057

Identity

Accession:
NC_074662 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Haihevirus› Pseudomonas_phage_PP9W2

TaxID: 2914450

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-111
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04397.22 best LytTR 44.6 1.90e-11 90.1% 94.9%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.86 73.0 7.56e-01 93.7% 95.1%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.78 71.0 6.95e-01 99.1% 90.7%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 40.0 5.10e-01 75.7% 100.0%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 33.0 3.64e-01 78.4% 57.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 28.0 3.73e-01 80.2% 78.8%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 38.0 4.05e-01 81.1% 67.7%
1k0eB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.61 45.0 3.03e-01 76.6% 73.7%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 39.0 4.38e-01 81.1% 85.5%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 36.0 3.75e-01 83.8% 64.5%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.58 43.0 2.96e-01 79.3% 75.7%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.57 43.0 2.88e-01 79.3% 78.3%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 35.0 3.81e-01 81.1% 73.6%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 38.0 4.25e-01 78.4% 87.2%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 35.0 3.79e-01 80.2% 77.4%
1u2kA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.54 36.0 3.47e-01 79.3% 58.6%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 25.0 2.83e-01 83.8% 58.0%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.50 37.0 3.55e-01 97.3% 66.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2095506 1170.1.2.6 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › UL128 0.68 31.0 4.15e-01 78.4% 83.9%
3587925 220.1.1.242 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EbsA 0.65 42.0 4.89e-01 91.0% 96.0%
4545531 220.1.1.255 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_10 0.63 40.0 4.67e-01 86.5% 90.0%
3595376 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 37.0 3.26e-01 82.0% 38.7%
81576 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.62 44.0 3.32e-01 74.8% 74.9%
5081361 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 39.0 4.15e-01 97.3% 72.0%
81577 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.60 45.0 2.99e-01 79.3% 76.2%
2445189 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 41.0 4.01e-01 81.1% 65.3%
3582821 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.58 37.0 4.08e-01 81.1% 80.0%
3593363 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 38.0 3.72e-01 81.1% 60.8%
3266245 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.80e-01 77.5% 68.3%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.53 35.0 3.59e-01 78.4% 70.5%
3212555 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 41.0 3.95e-01 83.8% 91.5%
3252809 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 38.0 3.63e-01 78.4% 65.4%
3861569 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.52 39.0 3.85e-01 100.0% 75.7%
3266483 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.86e-01 78.4% 78.2%
3225057 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 41.0 3.46e-01 85.6% 65.9%