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NC_074663.1__YP_010773404.1__QIT85_gp14__00014

Bact-Vir

Identity

Accession:: NC_074663 ↗
Kingdom:: phage

Quality

94.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hulijingvirus› Pseudomonas_phage_vB_Pae_LC3I3

TaxID: 2961988

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 98-184_202-217_255-370

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ndcA01	3.40.1010.10	Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain	0.65	32.0	4.32e-01	88.1%	89.4%
4hbzA00	3.40.50.1240	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like	0.59	33.0	3.69e-01	89.5%	68.0%
3i0zA02	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.58	29.0	3.25e-01	82.6%	58.5%
2cb0A02	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.57	29.0	3.40e-01	81.3%	66.4%
1pfkA02	3.40.50.460	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain	0.56	24.0	3.11e-01	90.4%	65.9%
3grfA01	3.40.50.1370	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase	0.56	30.0	3.61e-01	92.2%	77.5%
3g68A02	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.55	29.0	3.53e-01	85.4%	75.9%
4ccsA02	3.40.50.1400	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.55	31.0	4.06e-01	96.8%	98.4%
3nzpB02	3.20.20.10	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase	0.53	48.0	4.50e-01	95.4%	100.0%
1amuA01	3.40.50.980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.53	30.0	3.45e-01	99.5%	72.7%
4m37A01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.52	30.0	3.62e-01	84.5%	84.1%
3n2oA02	3.20.20.10	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase	0.52	47.0	4.29e-01	95.9%	100.0%
3x0dA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.51	30.0	3.61e-01	84.0%	85.4%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2129532	2007.5.1.13 ↗	a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › ALGX	0.81	76.0	6.74e-01	98.6%	92.6%
1140495	2007.5.1.9 ↗	a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › DHHW	0.78	74.0	6.51e-01	99.5%	90.8%
1203577	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.66	29.0	3.73e-01	79.9%	68.8%
3955048	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.63	29.0	3.52e-01	83.6%	63.4%
3287632	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.62	26.0	3.49e-01	75.8%	70.0%
4991445	7550.1.1.1 ↗	a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase	0.60	30.0	3.97e-01	88.6%	90.0%
3682976	2007.1.4.3 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase	0.55	30.0	3.22e-01	84.9%	58.9%
3232842	323.1.1.0 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases	0.55	32.0	3.81e-01	84.9%	83.2%
4945129	2002.1.1.101 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N	0.54	48.0	4.46e-01	95.9%	98.9%
3257794	7515.1.1.0 ↗	a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like	0.53	39.0	3.65e-01	90.4%	59.6%
1157890	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.53	34.0	3.67e-01	100.0%	74.7%
3606772	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.51	42.0	3.67e-01	88.6%	97.4%
4948177	2004.1.1.67 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA	0.51	30.0	3.01e-01	88.1%	56.8%
4857728	2003.1.5.66 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11	0.50	26.0	3.06e-01	93.2%	69.2%

D2 medium residues 1-81

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7xpcA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.58	43.0	2.95e-01	81.5%	90.5%
2xhyD00	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.52	46.0	2.89e-01	100.0%	41.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3698465	130.1.1.1 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP	0.66	24.0	3.07e-01	80.2%	52.0%
4531707	109.3.1.33 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_3	0.58	45.0	3.61e-01	87.7%	78.9%
3335941	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.56	42.0	2.84e-01	81.5%	87.0%
4405976	1180.1.1.1 ↗	alpha bundles › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › FliP	0.53	40.0	3.36e-01	88.9%	43.9%

D3 medium residues 185-201_218-254

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4467601	2008.1.1.59 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1	0.52	44.0	2.88e-01	100.0%	58.1%