←Back to structures

NC_074663.1__YP_010773424.1__QIT85_gp34__00034

Bact-Vir

NC_074663.1__YP_010773424.1__QIT85_gp34__00034

Identity

Accession:
NC_074663 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hulijingvirus› Pseudomonas_phage_vB_Pae_LC3I3

TaxID: 2961988

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-50
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ux5A01 6.10.30.50 Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.53 36.0 3.33e-01 71.1% 100.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4272781 2007.6.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI 0.60 45.0 2.72e-01 80.0% 51.6%
3936894 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.54 46.0 2.99e-01 100.0% 40.0%
D2 medium residues 54-98
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.36e-01 82.2% 76.5%
3m4iA02 3.30.1490.440 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.63 47.0 4.25e-01 86.7% 70.6%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 45.0 4.23e-01 82.2% 72.9%
3kptB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 45.0 3.48e-01 82.2% 38.0%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 47.0 4.04e-01 95.6% 53.9%
2mngA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 42.0 3.16e-01 82.2% 30.5%
3kalB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.57 42.0 3.93e-01 82.2% 64.4%
5ujeA01 3.30.1760.10 Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 0.55 40.0 3.21e-01 86.7% 57.7%
1pzxA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.54 37.0 3.83e-01 80.0% 100.0%
1sb7A02 3.30.2340.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain 0.53 38.0 2.91e-01 82.2% 38.2%
2dwcB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 36.0 3.46e-01 80.0% 57.6%
1l0qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 2.96e-01 100.0% 37.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3400351 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.61 45.0 4.21e-01 82.2% 65.0%
3941506 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.61 49.0 2.99e-01 93.3% 24.5%
3404558 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.59 43.0 4.26e-01 84.4% 76.0%
3870120 1181.1.1.0 ↗ 0.55 40.0 3.64e-01 100.0% 54.7%
3172253 2004.1.1.212 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Microtub_bd 0.54 41.0 2.54e-01 100.0% 11.9%