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NC_074664.1__YP_010773522.1__QIT86_gp54__00054

Bact-Vir

NC_074664.1__YP_010773522.1__QIT86_gp54__00054

Identity

Accession:
NC_074664 ↗
Kingdom:
phage

Quality

77.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lishizhenvirus› Pseudomonas_phage_BUCT566

TaxID: 2829367

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 52-137
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.70 39.0 3.82e-01 79.1% 50.0%
4tq1A03 1.10.246.190 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Autophagy protein Apg5, helix rich domain 0.66 36.0 4.26e-01 75.6% 77.6%
2oexA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.61 44.0 3.78e-01 100.0% 46.9%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 37.0 3.94e-01 72.1% 74.3%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 39.0 3.72e-01 70.9% 57.8%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 37.0 4.04e-01 73.3% 81.7%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.57 39.0 3.82e-01 72.1% 78.1%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.55 39.0 3.61e-01 74.4% 56.0%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.54 38.0 3.65e-01 73.3% 91.0%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.54 40.0 4.03e-01 86.0% 80.0%
7nmqA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.53 38.0 2.59e-01 76.7% 37.7%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 39.0 3.96e-01 94.2% 82.4%
3kflA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.52 38.0 3.11e-01 80.2% 38.9%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.52 30.0 3.43e-01 100.0% 80.3%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 46.0 3.28e-01 100.0% 52.3%
4i1mB01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 36.0 3.20e-01 98.8% 48.8%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.52 35.0 3.51e-01 70.9% 67.8%
3nkzA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.51 36.0 3.56e-01 94.2% 69.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5031927 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.57 37.0 3.75e-01 73.3% 65.9%
4984270 4.1.1.481 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_1st_1 0.56 39.0 3.79e-01 83.7% 63.0%
5043090 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.56 39.0 3.99e-01 93.0% 77.5%
3513338 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.56 36.0 2.76e-01 86.0% 25.3%
4085606 632.22.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.55 40.0 3.77e-01 79.1% 88.2%
4384750 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 37.0 3.62e-01 70.9% 65.3%
3616364 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.53 42.0 3.07e-01 86.0% 46.8%
4949471 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.52 44.0 3.61e-01 98.8% 60.0%
4831662 5043.1.1.1 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 0.52 37.0 4.04e-01 82.6% 97.0%
3520009 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 35.0 3.67e-01 70.9% 76.2%
3819834 605.6.1.8 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › Mlo 0.52 40.0 4.28e-01 82.6% 97.3%
3578554 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.51 42.0 2.59e-01 90.7% 20.9%
3484742 3922.1.1.197 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › BBS2_hp 0.51 33.0 3.40e-01 72.1% 68.2%
3775375 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 40.0 3.35e-01 86.0% 90.0%
3717860 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.50 39.0 3.95e-01 98.8% 85.6%