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NC_074751.1__YP_010774094.1__QJS24_gp40__00040

Bact-Vir

NC_074751.1__YP_010774094.1__QJS24_gp40__00040

Identity

Accession:
NC_074751 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rovertvirus› Serratia_phage_vB_SmaS_Rovert

TaxID: 2777363

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-112
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.81 31.0 4.98e-01 99.1% 93.0%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.67 60.0 5.59e-01 100.0% 87.9%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.67 59.0 5.81e-01 100.0% 89.9%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.67 61.0 5.81e-01 100.0% 90.1%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.67 61.0 5.99e-01 100.0% 93.3%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.66 59.0 5.72e-01 100.0% 88.5%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.66 58.0 4.83e-01 100.0% 55.4%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 58.0 5.66e-01 100.0% 90.8%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 57.0 5.55e-01 100.0% 87.1%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 59.0 4.84e-01 100.0% 56.8%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 58.0 5.57e-01 100.0% 85.9%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 59.0 5.60e-01 100.0% 88.4%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 58.0 4.56e-01 100.0% 47.9%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 59.0 5.00e-01 100.0% 65.0%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 58.0 4.44e-01 100.0% 46.9%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 59.0 5.58e-01 100.0% 90.8%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 58.0 5.78e-01 100.0% 97.3%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 57.0 5.52e-01 100.0% 88.6%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 57.0 5.50e-01 100.0% 93.0%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.64 56.0 4.40e-01 100.0% 44.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 56.0 4.40e-01 99.1% 47.9%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 57.0 4.38e-01 100.0% 45.4%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 57.0 5.69e-01 100.0% 96.5%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 57.0 4.41e-01 100.0% 46.5%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 57.0 4.41e-01 100.0% 45.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 56.0 4.32e-01 100.0% 46.7%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 30.0 3.58e-01 89.2% 67.6%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 55.0 4.25e-01 100.0% 47.4%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 37.0 4.07e-01 76.6% 75.9%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 54.0 4.70e-01 100.0% 64.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 31.0 4.03e-01 100.0% 100.0%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 29.0 3.24e-01 99.1% 64.0%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 37.0 3.05e-01 70.3% 85.6%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 37.0 3.38e-01 91.9% 57.4%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4059466 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.74 50.0 5.84e-01 97.3% 97.4%
4927100 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.71 31.0 3.45e-01 99.1% 50.0%
3791518 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.71 54.0 5.24e-01 78.4% 75.8%
4463778 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.71 64.0 6.24e-01 100.0% 90.8%
3839477 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.70 64.0 6.13e-01 100.0% 91.2%
3598260 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.68 60.0 5.80e-01 96.4% 95.2%
4083029 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.68 61.0 5.93e-01 100.0% 89.6%
4069893 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.67 61.0 5.86e-01 100.0% 88.0%
4591776 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.67 61.0 5.82e-01 100.0% 87.7%
1549270 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.67 59.0 5.85e-01 100.0% 91.5%
2392242 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.67 56.0 5.66e-01 100.0% 89.4%
2878142 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.67 60.0 5.84e-01 100.0% 88.6%
3388280 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.67 59.0 5.76e-01 100.0% 89.2%
4407599 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.67 61.0 5.87e-01 100.0% 93.6%
4194202 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.67 60.0 5.82e-01 100.0% 88.8%
3963789 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.67 60.0 5.92e-01 100.0% 93.3%
4050655 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.67 60.0 5.76e-01 100.0% 85.4%
3015240 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.67 59.0 5.76e-01 100.0% 88.5%
4146527 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.67 60.0 5.72e-01 100.0% 89.2%
3738030 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.66 60.0 5.62e-01 100.0% 88.9%
4460660 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.66 60.0 5.64e-01 100.0% 88.1%
5978 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.66 60.0 5.81e-01 100.0% 89.4%
4026069 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.66 59.0 5.57e-01 100.0% 91.1%
2141304 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.66 59.0 5.64e-01 100.0% 93.1%
4876748 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.66 58.0 5.64e-01 100.0% 87.1%
144176 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.66 60.0 5.80e-01 100.0% 89.5%
3725759 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.66 58.0 5.13e-01 100.0% 92.3%
2492033 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.66 59.0 5.49e-01 100.0% 85.7%
426904 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.66 58.0 5.68e-01 100.0% 88.6%
4569733 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.66 59.0 5.50e-01 100.0% 87.9%
3685634 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.65 54.0 4.85e-01 91.0% 90.6%
5977 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.65 58.0 5.66e-01 100.0% 90.8%
4650306 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.65 58.0 5.73e-01 100.0% 91.7%
3015241 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.65 57.0 5.66e-01 100.0% 91.6%
4480621 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.65 58.0 5.65e-01 100.0% 90.0%
4251800 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.65 58.0 5.48e-01 100.0% 82.3%
3387600 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.65 57.0 5.62e-01 100.0% 90.0%
3281112 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.65 58.0 5.72e-01 100.0% 92.5%
159555 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.64 58.0 5.58e-01 100.0% 89.0%
2588759 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.64 58.0 5.66e-01 100.0% 94.2%
1013950 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.64 57.0 5.56e-01 99.1% 89.3%
3406312 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.64 58.0 5.61e-01 100.0% 96.7%
2522057 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.64 56.0 5.46e-01 100.0% 87.0%
1871494 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.64 57.0 5.54e-01 100.0% 90.1%
4055466 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.64 57.0 5.53e-01 100.0% 91.9%
4460376 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.63 56.0 5.47e-01 100.0% 90.0%
4102438 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.63 57.0 5.58e-01 100.0% 92.5%
2476832 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.63 57.0 5.34e-01 100.0% 85.9%
4261491 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.63 56.0 5.26e-01 100.0% 82.9%
4234515 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.63 56.0 5.51e-01 100.0% 91.7%
4860663 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.63 55.0 5.15e-01 100.0% 77.9%
4212381 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.62 56.0 5.30e-01 100.0% 85.9%
2878151 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.62 55.0 5.41e-01 100.0% 91.7%
3251867 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.62 55.0 5.28e-01 100.0% 90.8%
158230 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.62 55.0 5.32e-01 100.0% 91.3%
4047098 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.62 56.0 5.44e-01 100.0% 92.5%
3625037 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.62 54.0 5.14e-01 99.1% 95.6%
3789625 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.61 54.0 5.11e-01 99.1% 95.6%
3507499 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.59 52.0 4.94e-01 100.0% 97.0%
3511321 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.57 42.0 2.71e-01 79.3% 34.6%
1291144 9.1.1.27 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF_C 0.53 42.0 4.14e-01 86.5% 78.6%
1567587 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 29.0 3.47e-01 71.2% 83.1%
3801015 5.1.4.94 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Det1 0.51 40.0 2.69e-01 85.6% 71.2%
1513775 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 28.0 3.36e-01 71.2% 81.9%
D2 high residues 120-181
PDB