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NC_074751.1__YP_010774106.1__QJS24_gp52__00052
Bact-VirNC_074751.1__YP_010774106.1__QJS24_gp52__00052
Identity
- Accession:
- NC_074751 ↗
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Taxonomy
TaxID: 2777363
Cluster
View cluster (19 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 98-168
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14279.13 best | HNH_5 | 30.7 | 3.40e-07 | 78.9% | 75.0% |
| PF01844.30 | HNH | 41.1 | 2.10e-10 | 70.4% | 76.6% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w4rA02 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.79 | 46.0 | 5.84e-01 | 71.8% | 100.0% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.73 | 64.0 | 6.11e-01 | 97.2% | 83.1% |
| 1m08A00 | 3.90.540.10 | Alpha Beta › Alpha-Beta Complex › Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain › Colicin/pyocin, DNase domain | 0.62 | 54.0 | 4.33e-01 | 94.4% | 66.4% |
| 1wgmA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 38.0 | 3.77e-01 | 80.3% | 63.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060915 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.93 | 82.0 | 8.06e-01 | 93.0% | 88.0% |
| 2036620 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.91 | 86.0 | 7.78e-01 | 100.0% | 78.3% |
| 3588377 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.87 | 81.0 | 7.05e-01 | 98.6% | 77.0% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.86 | 70.0 | 7.28e-01 | 91.5% | 93.8% |
| 3955812 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.84 | 71.0 | 6.37e-01 | 93.0% | 67.7% |
| 3804208 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.84 | 78.0 | 6.22e-01 | 100.0% | 85.4% |
| 4517886 | 377.1.1.3 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK | 0.83 | 51.0 | 6.41e-01 | 70.4% | 100.0% |
| 3905981 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.83 | 77.0 | 6.16e-01 | 100.0% | 86.9% |
| 3277754 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.83 | 67.0 | 6.75e-01 | 95.8% | 85.7% |
| 3950953 | 377.1.1.78 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 | 0.83 | 66.0 | 6.72e-01 | 95.8% | 85.7% |
| 3952818 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.83 | 66.0 | 6.56e-01 | 93.0% | 81.1% |
| 3839237 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.80 | 72.0 | 5.33e-01 | 97.2% | 46.5% |
| 1868224 | 377.1.1.3 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK | 0.80 | 54.0 | 5.80e-01 | 77.5% | 80.3% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.78 | 71.0 | 5.91e-01 | 97.2% | 83.5% |
| 4965235 | 377.1.1.136 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF29291 | 0.76 | 51.0 | 5.95e-01 | 77.5% | 98.0% |
| 5059323 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 70.0 | 5.36e-01 | 98.6% | 90.7% |
| 3977110 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 68.0 | 6.36e-01 | 97.2% | 88.2% |
| 4303143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.73 | 58.0 | 5.51e-01 | 100.0% | 71.8% |
| 3717094 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.70 | 59.0 | 4.05e-01 | 90.1% | 78.2% |
| 4448977 | 378.1.1.15 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Col-Pyo_DNase | 0.64 | 55.0 | 4.34e-01 | 93.0% | 62.1% |
| 5072746 | 377.3.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › SAP30 zinc finger › SAP30 zinc finger | 0.64 | 50.0 | 5.44e-01 | 85.9% | 100.0% |
| 5083361 | 377.3.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › SAP30 zinc finger › SAP30 zinc finger | 0.61 | 44.0 | 4.96e-01 | 76.1% | 100.0% |
| 3786592 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 40.0 | 3.42e-01 | 83.1% | 52.5% |