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NC_074754.1__YP_010774254.1__QJS27_gp08__00008

Bact-Vir

NC_074754.1__YP_010774254.1__QJS27_gp08__00008

Identity

Accession:
NC_074754 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bonzeevirus› Serratia_phage_vB_SmaS_Ulliraptor

TaxID: 2902694

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
Domain cluster: rep: NC_047985.1__YP_009802580.1__HOT39_gp78__00078__D2-63
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 5.36e-01 100.0% 89.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 4.83e-01 100.0% 73.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 42.0 4.70e-01 98.6% 95.8%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 48.0 4.57e-01 100.0% 66.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.28e-01 100.0% 68.1%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 44.0 2.76e-01 73.2% 41.6%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 42.0 2.73e-01 70.4% 28.0%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 42.0 2.64e-01 70.4% 32.2%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 42.0 2.85e-01 71.8% 96.1%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.61 53.0 4.67e-01 100.0% 71.0%
2yugA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 51.0 4.06e-01 97.2% 82.6%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 4.17e-01 100.0% 71.1%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.36e-01 80.3% 87.7%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.59 51.0 3.96e-01 100.0% 68.7%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 34.0 3.04e-01 83.1% 40.6%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.30e-01 98.6% 77.5%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 40.0 2.53e-01 73.2% 32.9%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 48.0 3.92e-01 100.0% 67.8%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 48.0 4.64e-01 100.0% 86.3%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.25e-01 100.0% 79.2%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.46e-01 98.6% 90.0%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.55 39.0 4.33e-01 80.3% 100.0%
7fjlA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.54 46.0 3.22e-01 95.8% 70.8%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.53 44.0 3.74e-01 97.2% 93.8%
2fhxA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 41.0 2.91e-01 90.1% 55.9%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 40.0 3.65e-01 100.0% 62.9%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.83e-01 81.7% 97.3%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.50 44.0 4.02e-01 100.0% 77.3%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.50 44.0 3.77e-01 100.0% 83.6%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 39.0 4.11e-01 87.3% 98.4%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 51.0 5.66e-01 100.0% 92.7%
4030850 4.1.1.165 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6501 0.71 53.0 5.01e-01 98.6% 65.9%
2700914 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 45.0 4.41e-01 100.0% 62.5%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 50.0 4.96e-01 100.0% 76.0%
3486495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 3.44e-01 100.0% 29.1%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.66 43.0 3.69e-01 100.0% 40.9%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 43.0 4.62e-01 100.0% 80.0%
3782325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 51.0 5.42e-01 100.0% 93.7%
3482683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.30e-01 100.0% 95.0%
3523918 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.66 48.0 5.03e-01 100.0% 86.2%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.65 47.0 4.99e-01 100.0% 90.0%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 42.0 3.78e-01 98.6% 46.0%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 42.0 4.53e-01 98.6% 83.6%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.65 42.0 4.69e-01 100.0% 87.3%
3598285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.80e-01 100.0% 80.0%
4128902 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 42.0 4.74e-01 98.6% 94.0%
3495480 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 47.0 5.08e-01 98.6% 93.3%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.38e-01 100.0% 66.3%
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.80e-01 98.6% 80.0%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.84e-01 100.0% 88.3%
3432461 5.1.4.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.64 44.0 2.69e-01 71.8% 43.5%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 41.0 3.10e-01 98.6% 26.3%
2890675 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 48.0 5.02e-01 100.0% 90.6%
3541996 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.63 47.0 3.48e-01 100.0% 30.0%
1884741 4.1.1.130 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_19 0.63 44.0 4.68e-01 100.0% 88.1%
5022923 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.61 41.0 3.93e-01 70.4% 88.2%
4172704 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 43.0 4.77e-01 88.7% 96.4%
3958137 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.86e-01 100.0% 77.8%
3687555 4.1.1.320 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.59 40.0 3.69e-01 100.0% 51.0%
4419940 58.2.1.0 ↗ beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain 0.59 40.0 3.24e-01 71.8% 92.6%
4253206 4.1.1.127 ↗ beta barrels › SH3 › SH3 › SH3 › DtxR 0.59 51.0 4.79e-01 100.0% 77.8%
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.58 47.0 4.74e-01 98.6% 90.0%
3781502 220.1.1.228 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PKH3_C 0.57 49.0 3.82e-01 100.0% 72.6%
3969959 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 51.0 4.71e-01 100.0% 78.9%
3786183 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.56 49.0 3.94e-01 98.6% 71.4%
3510681 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 4.81e-01 100.0% 93.3%
4101587 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.55 47.0 4.20e-01 100.0% 65.7%
3244907 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 4.48e-01 100.0% 78.9%
5043132 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.54 44.0 4.17e-01 100.0% 76.5%
1746358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 47.0 4.16e-01 100.0% 70.4%
5042597 4.15.1.0 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.53 44.0 4.07e-01 100.0% 73.3%
4526294 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 4.31e-01 85.9% 100.0%
2726885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 45.0 3.94e-01 100.0% 69.9%
4797890 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.52 46.0 4.40e-01 100.0% 94.1%
3636081 4972.1.1.1 ↗ beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.52 40.0 3.26e-01 88.7% 71.9%
3270570 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 45.0 3.91e-01 100.0% 69.6%
4347162 4252.1.1.13 ↗ beta barrels › AttH-like › AttH-like › AttH-like › PF27123 0.50 42.0 3.75e-01 97.2% 93.6%
3620621 219.1.1.80 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF4796_C 0.50 35.0 2.89e-01 100.0% 38.5%