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NC_074758.1__YP_010774544.1__QJV46_gp38__00038

Bact-Vir

NC_074758.1__YP_010774544.1__QJV46_gp38__00038

Identity

Accession:
NC_074758 ↗
Kingdom:
phage

Quality

63.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Serbinvirus› Serratia_phage_vB_SmaS_Opt-155

TaxID: 2902690

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-55
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 53.0 3.26e-01 96.0% 26.7%
1r4aE00 1.10.220.60 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › GRIP domain 0.57 38.0 3.83e-01 70.0% 80.4%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.56 40.0 3.74e-01 84.0% 60.3%
1ekjA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.56 41.0 2.79e-01 80.0% 75.2%
3q23A04 6.10.140.1370 Special › Helix non-globular › Helix Hairpins › 0.55 47.0 3.97e-01 100.0% 92.3%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.62e-01 88.0% 59.1%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.53 37.0 3.53e-01 88.0% 61.7%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 45.0 3.63e-01 100.0% 70.9%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.52 40.0 2.96e-01 84.0% 66.2%
4fqnC00 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.52 44.0 3.74e-01 98.0% 96.5%
6s6hA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 37.0 3.03e-01 76.0% 75.2%
1uj8A00 1.10.10.600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IscX-like 0.51 40.0 3.63e-01 90.0% 65.8%
3l9wA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 36.0 2.58e-01 76.0% 96.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4433184 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.90 64.0 6.16e-01 74.0% 72.7%
5050127 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.69 63.0 4.09e-01 100.0% 46.3%
4591513 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.66 61.0 5.25e-01 100.0% 68.0%
3724166 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.63 56.0 5.16e-01 100.0% 83.1%
4932584 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.60 50.0 3.37e-01 100.0% 45.1%
4050022 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.58 44.0 4.31e-01 84.0% 74.5%
4169204 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.56 43.0 4.17e-01 84.0% 74.5%
4378615 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.56 43.0 4.19e-01 86.0% 74.5%
5036595 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.54 41.0 4.03e-01 86.0% 81.8%
4093240 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.54 41.0 4.02e-01 84.0% 74.5%
3302202 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.54 40.0 2.44e-01 80.0% 67.6%
3504034 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.53 42.0 3.59e-01 86.0% 88.7%
3595737 109.4.1.218 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP 0.52 38.0 2.78e-01 78.0% 53.3%
3707222 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 38.0 3.74e-01 92.0% 74.5%
3219246 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.50 39.0 3.74e-01 84.0% 76.7%
D2 high residues 88-165
PDB
D3 high residues 191-238
PDB
Domain cluster: rep: ON529867.1__USN16749.1__STRZYGA_00280__00028__D90-136