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NC_074758.1__YP_010774547.1__QJV46_gp41__00041

Bact-Vir

NC_074758.1__YP_010774547.1__QJV46_gp41__00041

Identity

Accession:
NC_074758 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Serbinvirus› Serratia_phage_vB_SmaS_Opt-155

TaxID: 2902690

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-77
PDB
Domain cluster: rep: KX078569.1__ANM46521.1__MP1_gp0119__00120__D4-59
D2 high residues 82-155
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.77 42.0 4.98e-01 70.3% 78.4%
4b8vA02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.77 45.0 4.58e-01 71.6% 58.9%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 51.0 5.40e-01 70.3% 77.6%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 52.0 5.45e-01 71.6% 79.4%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 52.0 4.69e-01 74.3% 54.5%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.73 41.0 4.87e-01 70.3% 83.7%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.71 40.0 4.62e-01 70.3% 80.0%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 47.0 4.83e-01 70.3% 73.6%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.69 49.0 4.94e-01 74.3% 75.3%
2iw3A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 46.0 3.33e-01 71.6% 26.0%
6hn7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.67e-01 74.3% 77.8%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.64 43.0 4.26e-01 70.3% 82.1%
3nxaB00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 45.0 4.14e-01 78.4% 66.0%
3tduA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 42.0 4.00e-01 77.0% 74.4%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.20e-01 70.3% 46.4%
2kbiA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 42.0 4.14e-01 86.5% 78.5%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.54 46.0 3.70e-01 100.0% 83.7%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 40.0 3.87e-01 78.4% 91.6%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.53 37.0 2.87e-01 73.0% 62.7%
3rm3A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.23e-01 100.0% 95.9%
3euhC02 1.10.10.2260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain 0.52 35.0 3.19e-01 70.3% 73.1%
1repC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 2.97e-01 70.3% 68.3%
1vljA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.52 37.0 2.82e-01 79.7% 36.0%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.50 37.0 3.69e-01 79.7% 96.1%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 43.0 2.90e-01 100.0% 49.2%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 37.0 3.32e-01 79.7% 88.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3366705 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.79 51.0 5.42e-01 70.3% 75.4%
4322705 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.78 50.0 5.14e-01 70.3% 68.6%
4389062 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.78 54.0 5.93e-01 73.0% 88.3%
3622395 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.78 51.0 5.37e-01 70.3% 75.4%
4352200 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.78 50.0 5.11e-01 70.3% 68.6%
4329911 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 49.0 5.33e-01 70.3% 80.0%
4460243 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 53.0 5.96e-01 71.6% 98.2%
4519321 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 52.0 5.56e-01 71.6% 83.1%
4083584 3601.1.1.0 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.76 49.0 3.87e-01 70.3% 32.7%
3164063 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 52.0 5.35e-01 70.3% 87.1%
4630854 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 49.0 5.78e-01 70.3% 98.0%
1098014 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 52.0 5.48e-01 71.6% 80.6%
282935 3601.1.1.1 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.75 50.0 3.64e-01 70.3% 26.0%
4315777 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.75 53.0 4.27e-01 74.3% 39.3%
3284686 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.75 53.0 3.71e-01 74.3% 24.8%
3587635 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 53.0 5.80e-01 74.3% 95.0%
3285380 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 52.0 4.34e-01 74.3% 47.2%
4230774 101.1.9.117 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.73 50.0 4.64e-01 71.6% 55.8%
4218351 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.73 50.0 5.62e-01 71.6% 96.4%
4670849 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 51.0 4.75e-01 74.3% 60.0%
3954617 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 49.0 5.44e-01 70.3% 96.4%
4456842 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.72 50.0 5.48e-01 74.3% 90.0%
3974460 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 50.0 4.17e-01 74.3% 43.8%
4057369 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.70 49.0 3.96e-01 74.3% 38.6%
3718248 101.1.9.30 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.69 50.0 4.78e-01 78.4% 76.7%
3514709 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.69 47.0 5.29e-01 70.3% 94.5%
4391818 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.69 48.0 4.57e-01 71.6% 63.5%
3281873 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.69 52.0 3.71e-01 82.4% 26.5%
4286215 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 47.0 4.96e-01 71.6% 83.1%
3728047 101.1.9.30 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.67 47.0 4.92e-01 73.0% 100.0%
4668740 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 49.0 4.39e-01 78.4% 59.0%
4087721 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 48.0 5.03e-01 83.8% 87.7%
3574631 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 45.0 3.36e-01 73.0% 37.3%
388408 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.64 45.0 3.94e-01 75.7% 50.8%
4391496 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.63 40.0 4.07e-01 70.3% 64.0%
5072380 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.59 40.0 3.68e-01 70.3% 56.0%
3259953 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 3.14e-01 70.3% 49.7%
3789538 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 42.0 4.06e-01 87.8% 81.2%
3715903 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 45.0 3.84e-01 97.3% 96.0%
3706008 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 36.0 3.52e-01 73.0% 67.5%