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NC_074763.1__YP_010774594.1__QJ535_gp7__00007
Bact-VirNC_074763.1__YP_010774594.1__QJ535_gp7__00007
Identity
- Accession:
- NC_074763 ↗
- Kingdom:
- phage
Quality
88.5
mean pLDDT
Taxonomy
Loebvirae›
Hofneiviricota›
Faserviricetes›
Tubulavirales›
Inoviridae›
Tertilicivirus›
Pseudomonas_phage_Pf3
TaxID: 10872
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 52-194
Domain cluster:
rep: NC_055055.1__YP_010084014.1__KMD55_gp11__00011__D125-284
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23343.3 best | REP_ORF2-G2P | 34.5 | 2.70e-08 | 79.0% | 62.6% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.83 | 52.0 | 6.38e-01 | 73.4% | 96.8% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.77 | 49.0 | 5.88e-01 | 96.5% | 94.7% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.76 | 53.0 | 5.41e-01 | 96.5% | 73.9% |
| 2a6mA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.73 | 51.0 | 5.36e-01 | 71.3% | 89.2% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.71 | 51.0 | 5.56e-01 | 95.8% | 89.0% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.71 | 44.0 | 5.39e-01 | 75.5% | 98.9% |
| 4er8A00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.70 | 60.0 | 5.72e-01 | 95.8% | 78.8% |
| 4clfA02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.70 | 53.0 | 4.84e-01 | 78.3% | 69.0% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.69 | 43.0 | 5.31e-01 | 96.5% | 100.0% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.69 | 64.0 | 5.13e-01 | 100.0% | 91.0% |
| 4mt1A07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.68 | 44.0 | 5.12e-01 | 71.3% | 91.2% |
| 5t0oA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.67 | 47.0 | 5.44e-01 | 98.6% | 100.0% |
| 2pd1A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 44.0 | 5.20e-01 | 70.6% | 100.0% |
| 3ezuA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.66 | 50.0 | 4.97e-01 | 77.6% | 77.0% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 44.0 | 5.16e-01 | 71.3% | 100.0% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.66 | 61.0 | 5.49e-01 | 100.0% | 87.6% |
| 4mt1A02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.65 | 46.0 | 5.26e-01 | 99.3% | 100.0% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 44.0 | 5.03e-01 | 70.6% | 93.3% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 44.0 | 5.09e-01 | 72.0% | 100.0% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.63 | 53.0 | 5.12e-01 | 100.0% | 79.0% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 43.0 | 4.94e-01 | 70.6% | 100.0% |
| 1q2lA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.62 | 46.0 | 3.89e-01 | 75.5% | 80.1% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 45.0 | 5.10e-01 | 100.0% | 99.1% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 44.0 | 4.86e-01 | 74.1% | 95.5% |
| 6usmB01 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.61 | 52.0 | 5.23e-01 | 92.3% | 100.0% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 41.0 | 3.62e-01 | 70.6% | 85.7% |
| 4ae5C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 41.0 | 3.99e-01 | 70.6% | 83.5% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.59 | 51.0 | 5.02e-01 | 93.0% | 100.0% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.59 | 53.0 | 4.63e-01 | 97.9% | 71.0% |
| 2iruA02 | 3.30.70.3300 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 50.0 | 5.14e-01 | 93.7% | 100.0% |
| 3rjaA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.58 | 51.0 | 4.36e-01 | 95.8% | 68.6% |
| 5fxdA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.58 | 51.0 | 4.35e-01 | 96.5% | 82.4% |
| 6c80A03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.58 | 50.0 | 4.24e-01 | 93.0% | 83.5% |
| 3mcsA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 51.0 | 4.46e-01 | 97.2% | 95.8% |
| 3f44A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 50.0 | 4.39e-01 | 96.5% | 97.1% |
| 3u02A01 | 3.30.70.2200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 48.0 | 4.87e-01 | 95.1% | 99.3% |
| 4mlaA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.55 | 48.0 | 4.16e-01 | 95.8% | 74.4% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.53 | 34.0 | 3.51e-01 | 95.1% | 65.7% |
| 5d79A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.51 | 42.0 | 3.85e-01 | 95.8% | 68.4% |
| 3vteA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.50 | 41.0 | 3.84e-01 | 95.8% | 69.2% |
| 2hfqA00 | 3.10.510.10 | Alpha Beta › Roll › NE1680-like fold › NE1680-like | 0.50 | 30.0 | 3.75e-01 | 93.7% | 100.0% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4304749 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.96 | 92.0 | 7.23e-01 | 100.0% | 54.2% |
| 4959045 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.80 | 69.0 | 6.80e-01 | 100.0% | 86.0% |
| 4315665 | 304.8.1.91 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 | 0.76 | 71.0 | 6.17e-01 | 100.0% | 84.8% |
| 4133039 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.76 | 71.0 | 6.75e-01 | 99.3% | 92.1% |
| 4511949 | 304.48.1.74 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Phage_GPA | 0.75 | 70.0 | 5.82e-01 | 100.0% | 76.2% |
| 4170426 | 304.8.1.70 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA | 0.75 | 70.0 | 5.49e-01 | 100.0% | 64.2% |
| 3947798 | 304.8.1.70 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA | 0.75 | 69.0 | 5.50e-01 | 100.0% | 65.7% |
| 4173640 | 304.55.1.27 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Phage_GPA | 0.75 | 70.0 | 5.53e-01 | 100.0% | 66.5% |
| 4944755 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.75 | 45.0 | 5.55e-01 | 71.3% | 95.6% |
| 3375241 | 304.8.1.23 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N | 0.74 | 69.0 | 5.31e-01 | 100.0% | 74.4% |
| 3348724 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.74 | 49.0 | 5.67e-01 | 100.0% | 92.4% |
| 4967300 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.73 | 43.0 | 5.44e-01 | 70.6% | 98.8% |
| 3280378 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.71 | 53.0 | 5.07e-01 | 76.9% | 75.2% |
| 3344616 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.71 | 67.0 | 5.84e-01 | 100.0% | 88.8% |
| 5050897 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.71 | 42.0 | 5.22e-01 | 70.6% | 97.6% |
| 3682007 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.71 | 66.0 | 5.88e-01 | 100.0% | 78.4% |
| 3377701 | 304.8.1.23 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N | 0.71 | 66.0 | 5.73e-01 | 100.0% | 91.0% |
| 3369213 | 304.28.1.25 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Helitron_like_N, REP_ORF2-G2P | 0.71 | 66.0 | 5.85e-01 | 100.0% | 88.4% |
| 151843 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.70 | 60.0 | 5.72e-01 | 95.8% | 78.8% |
| 3281978 | 304.159.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C | 0.70 | 46.0 | 5.39e-01 | 71.3% | 95.0% |
| 4173837 | 304.38.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › PyrI | 0.68 | 42.0 | 4.90e-01 | 71.3% | 87.0% |
| 4038066 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.68 | 50.0 | 5.44e-01 | 97.9% | 93.9% |
| 5078562 | 304.55.2.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp | 0.68 | 62.0 | 5.64e-01 | 97.2% | 78.9% |
| 1491756 | 304.55.1.9 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PV_NSP1 | 0.68 | 63.0 | 5.17e-01 | 100.0% | 87.5% |
| 3596967 | 304.46.1.0 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain | 0.66 | 53.0 | 5.19e-01 | 100.0% | 77.2% |
| 4051078 | 304.4.1.71 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF4937 | 0.66 | 50.0 | 5.48e-01 | 95.1% | 100.0% |
| 4240079 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.65 | 44.0 | 5.10e-01 | 74.8% | 99.0% |
| 2834623 | 304.55.1.7 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_N | 0.64 | 57.0 | 5.31e-01 | 95.8% | 89.7% |
| 3729382 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.64 | 46.0 | 5.07e-01 | 74.1% | 96.4% |
| 4218099 | 304.55.1.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 | 0.63 | 53.0 | 5.44e-01 | 96.5% | 94.1% |
| 3062929 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.63 | 44.0 | 5.01e-01 | 71.3% | 100.0% |
| 3786175 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.63 | 53.0 | 5.07e-01 | 100.0% | 78.5% |
| 3634393 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.63 | 43.0 | 4.98e-01 | 100.0% | 100.0% |
| 5157 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.62 | 44.0 | 4.86e-01 | 74.1% | 95.5% |
| 1562176 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.62 | 43.0 | 4.83e-01 | 71.3% | 96.2% |
| 3181053 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.61 | 54.0 | 4.26e-01 | 97.2% | 55.8% |
| 4222843 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.60 | 55.0 | 4.43e-01 | 99.3% | 57.9% |
| 2721342 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.60 | 54.0 | 4.35e-01 | 97.2% | 59.9% |
| 3727517 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.60 | 43.0 | 4.81e-01 | 74.1% | 100.0% |
| 1168089 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.60 | 45.0 | 4.80e-01 | 96.5% | 91.9% |
| 3183729 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.59 | 44.0 | 4.57e-01 | 98.6% | 84.6% |
| 4378266 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.59 | 53.0 | 4.37e-01 | 98.6% | 59.2% |
| 4543745 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.59 | 43.0 | 2.91e-01 | 81.8% | 20.8% |
| 4017213 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.59 | 53.0 | 4.16e-01 | 99.3% | 58.7% |
| 4151784 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.59 | 51.0 | 4.16e-01 | 95.1% | 57.1% |
| 4540010 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.59 | 53.0 | 4.19e-01 | 99.3% | 55.3% |
| 3275597 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.58 | 52.0 | 4.30e-01 | 97.9% | 60.8% |
| 4018928 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.58 | 52.0 | 4.23e-01 | 98.6% | 57.7% |
| 4022887 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.58 | 49.0 | 4.03e-01 | 93.7% | 57.9% |
| 1711357 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.58 | 51.0 | 4.19e-01 | 97.9% | 59.8% |
| 3252362 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.57 | 51.0 | 4.35e-01 | 97.9% | 63.8% |
| 4017351 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.57 | 50.0 | 3.99e-01 | 95.1% | 55.9% |
| 4219489 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.57 | 50.0 | 4.06e-01 | 95.8% | 54.9% |
| 4230728 | 304.4.1.70 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › PF29828 | 0.56 | 45.0 | 4.76e-01 | 96.5% | 94.6% |
| 3192994 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.56 | 49.0 | 3.90e-01 | 97.9% | 69.3% |
| 4606373 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.56 | 50.0 | 4.07e-01 | 99.3% | 56.7% |
| 3677529 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 49.0 | 3.86e-01 | 96.5% | 54.7% |
| 4199064 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.55 | 48.0 | 3.97e-01 | 98.6% | 58.8% |
| 3735140 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 48.0 | 3.96e-01 | 98.6% | 57.0% |
| 4011256 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 48.0 | 4.02e-01 | 98.6% | 60.0% |
| 3735269 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 47.0 | 3.88e-01 | 95.1% | 57.7% |
| 4018050 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 46.0 | 3.83e-01 | 95.8% | 57.6% |
| 3316326 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 47.0 | 3.77e-01 | 97.2% | 58.6% |
D2
high
residues 206-273
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7t7kA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.71 | 52.0 | 4.32e-01 | 77.9% | 100.0% |
| 4i2aA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.68 | 49.0 | 4.47e-01 | 77.9% | 84.0% |
| 4gr2A00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.68 | 60.0 | 5.15e-01 | 100.0% | 77.3% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.67 | 47.0 | 4.80e-01 | 73.5% | 83.6% |
| 3q23A08 | 1.20.140.110 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.66 | 53.0 | 4.14e-01 | 91.2% | 69.5% |
| 3d5lA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 39.0 | 4.42e-01 | 92.6% | 78.8% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.65 | 47.0 | 3.62e-01 | 77.9% | 62.4% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.63 | 49.0 | 4.06e-01 | 85.3% | 86.5% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.63 | 52.0 | 4.04e-01 | 91.2% | 66.7% |
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.63 | 44.0 | 3.76e-01 | 75.0% | 76.5% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.63 | 50.0 | 4.90e-01 | 86.8% | 100.0% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.62 | 56.0 | 4.58e-01 | 100.0% | 56.5% |
| 3p42A02 | 6.10.250.2280 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 46.0 | 4.60e-01 | 80.9% | 81.4% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 47.0 | 3.63e-01 | 83.8% | 49.4% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.61 | 48.0 | 4.60e-01 | 85.3% | 89.7% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 47.0 | 3.68e-01 | 85.3% | 62.4% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 41.0 | 3.68e-01 | 72.1% | 72.9% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.59 | 42.0 | 3.46e-01 | 76.5% | 46.3% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.59 | 44.0 | 3.79e-01 | 82.4% | 79.8% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 41.0 | 3.94e-01 | 73.5% | 75.9% |
| 6lpfA01 | 1.10.730.20 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › | 0.58 | 48.0 | 3.68e-01 | 92.6% | 62.6% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 41.0 | 3.11e-01 | 77.9% | 45.1% |
| 6s8bA01 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.56 | 49.0 | 3.84e-01 | 100.0% | 81.0% |
| 3hn2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 44.0 | 3.62e-01 | 88.2% | 69.5% |
| 1m4rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 42.0 | 3.36e-01 | 86.8% | 48.9% |
| 1s7bA00 | 1.10.3730.20 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.53 | 42.0 | 3.63e-01 | 100.0% | 54.7% |
| 1eteA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 45.0 | 3.68e-01 | 98.5% | 69.4% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.52 | 46.0 | 4.28e-01 | 97.1% | 95.3% |
| 1gs0A01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.52 | 36.0 | 2.99e-01 | 72.1% | 97.7% |
| 4hhyC01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.50 | 35.0 | 2.90e-01 | 73.5% | 43.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3605419 | 1189.1.1.3 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › GARP | 0.80 | 57.0 | 4.00e-01 | 75.0% | 82.0% |
| 5057208 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.74 | 51.0 | 4.54e-01 | 73.5% | 87.0% |
| 3583793 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.73 | 53.0 | 4.30e-01 | 77.9% | 75.4% |
| 3441654 | 109.3.1.163 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 | 0.69 | 51.0 | 3.18e-01 | 80.9% | 14.9% |
| 3592019 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.66 | 46.0 | 4.48e-01 | 73.5% | 88.0% |
| 4542362 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.64 | 56.0 | 3.64e-01 | 100.0% | 69.8% |
| 4221177 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.64 | 42.0 | 4.86e-01 | 97.1% | 92.0% |
| 3576327 | 6067.1.1.1 ↗ | alpha arrays › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › SGTA_dimer | 0.63 | 50.0 | 4.90e-01 | 86.8% | 85.3% |
| 3325067 | 138.1.1.1 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › RFC1 | 0.62 | 55.0 | 4.52e-01 | 100.0% | 97.6% |
| 3481547 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.61 | 38.0 | 2.92e-01 | 70.6% | 28.0% |
| 5072892 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.61 | 43.0 | 3.88e-01 | 75.0% | 92.6% |
| 3948193 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.60 | 46.0 | 3.67e-01 | 83.8% | 42.8% |
| 4125686 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.58 | 49.0 | 3.59e-01 | 92.6% | 62.2% |
| 3632454 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.58 | 54.0 | 4.95e-01 | 100.0% | 80.0% |
| 3595858 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.58 | 49.0 | 4.04e-01 | 95.6% | 98.4% |
| 4120292 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.58 | 38.0 | 3.63e-01 | 73.5% | 57.5% |
| 3504180 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 52.0 | 3.78e-01 | 98.5% | 58.2% |
| None | — | 0.56 | 49.0 | 3.53e-01 | 97.1% | 55.3% | |
| 3738395 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.55 | 41.0 | 2.96e-01 | 83.8% | 80.9% |
| 3493683 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.55 | 49.0 | 3.40e-01 | 98.5% | 56.4% |
| 3470615 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.55 | 48.0 | 3.33e-01 | 98.5% | 54.2% |
| 3513338 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.55 | 48.0 | 3.30e-01 | 97.1% | 56.4% |
| 3704227 | 138.1.1.1 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › RFC1 | 0.54 | 43.0 | 3.68e-01 | 94.1% | 99.2% |
| 4549209 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.54 | 41.0 | 3.39e-01 | 83.8% | 60.0% |