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YP_010806207.1
Arc-VirNC_077215__YP_010806207.1__QKV96-gp10__00010
Identity
- Accession:
- NC_077215 ↗
- Protein ID:
- YP_010806207.1 ↗
- Kingdom:
- archaea
Quality
80.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-69
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wx4A00 | 3.30.70.2770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 33.0 | 2.89e-01 | 73.1% | 36.7% |
| 3ly7A01 | 3.40.50.11830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 40.0 | 3.06e-01 | 71.6% | 65.8% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.58 | 28.0 | 2.57e-01 | 73.1% | 31.5% |
| 2c7yA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.58 | 48.0 | 3.07e-01 | 98.5% | 83.1% |
| 6lpnA04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.41e-01 | 73.1% | 97.9% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.54 | 45.0 | 2.68e-01 | 100.0% | 93.6% |
| 4ubtD00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 45.0 | 2.91e-01 | 98.5% | 84.8% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 33.0 | 3.08e-01 | 94.0% | 44.4% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 38.0 | 2.97e-01 | 73.1% | 90.0% |
| 4clcA00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.53 | 39.0 | 3.01e-01 | 80.6% | 100.0% |
| 1k3sA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 38.0 | 3.30e-01 | 76.1% | 94.4% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.53 | 40.0 | 3.37e-01 | 82.1% | 89.8% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.52 | 37.0 | 3.04e-01 | 76.1% | 52.0% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 34.0 | 2.77e-01 | 70.1% | 53.3% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.50 | 34.0 | 3.06e-01 | 71.6% | 64.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5023509 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.59 | 28.0 | 3.28e-01 | 70.1% | 62.2% |
| 4595166 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.57 | 47.0 | 3.40e-01 | 97.0% | 93.8% |
| 1117555 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.57 | 31.0 | 3.05e-01 | 76.1% | 50.0% |
| 3381094 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.54 | 37.0 | 2.52e-01 | 73.1% | 80.2% |
| 3599358 | 2.9.1.0 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like | 0.54 | 42.0 | 2.65e-01 | 86.6% | 84.0% |
| 3509429 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 42.0 | 3.49e-01 | 89.6% | 92.3% |
| 3389720 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.53 | 44.0 | 2.74e-01 | 94.0% | 71.2% |
| 3238115 | 389.1.1.145 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29138 | 0.52 | 29.0 | 3.15e-01 | 73.1% | 67.3% |
| 4540833 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.51 | 35.0 | 3.28e-01 | 71.6% | 96.5% |
| 3475905 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.51 | 45.0 | 2.74e-01 | 100.0% | 36.0% |
| 3168083 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.51 | 45.0 | 2.77e-01 | 100.0% | 41.9% |
| 3923045 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.51 | 45.0 | 2.76e-01 | 100.0% | 42.9% |
| 5011747 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.51 | 38.0 | 3.43e-01 | 79.1% | 67.8% |
| 1170594 | 885.1.1.1 ↗ | a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N | 0.50 | 34.0 | 3.06e-01 | 71.6% | 64.2% |