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NC_079145.1__YP_010842782.1__QLQ78_gp55__00055

Bact-Vir

NC_079145.1__YP_010842782.1__QLQ78_gp55__00055

Identity

Accession:
NC_079145 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Santhisvirus› Gordonia_phage_Jojo24

TaxID: 2859476

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-124
PDB
Domain cluster: rep: JN116825.1__AEV51999.1__X__00003__D21-100
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 29.0 3.20e-01 82.3% 43.8%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.67 25.0 3.30e-01 76.0% 58.2%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 31.0 2.92e-01 85.4% 35.5%
4apmA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.59 38.0 3.78e-01 99.0% 61.2%
1jelP00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.56 40.0 4.18e-01 74.0% 100.0%
2zvbA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.56 42.0 3.83e-01 80.2% 88.3%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.56 46.0 4.53e-01 90.6% 95.0%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 46.0 4.46e-01 90.6% 86.1%
1w8kA02 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.54 39.0 3.78e-01 100.0% 67.3%
4durB01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.53 33.0 3.61e-01 89.6% 74.1%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.53 36.0 2.98e-01 70.8% 82.0%
1wyzA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.53 39.0 3.81e-01 81.2% 99.1%
4pdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 38.0 3.84e-01 84.4% 76.8%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 31.0 2.55e-01 75.0% 31.1%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.54e-01 88.5% 93.6%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.51 44.0 3.43e-01 97.9% 98.3%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.70e-01 79.2% 98.2%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 29.0 3.54e-01 84.4% 93.0%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 42.0 3.76e-01 93.8% 91.5%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 43.0 3.96e-01 95.8% 84.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3995797 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.67 28.0 3.37e-01 82.3% 56.9%
943 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.66 31.0 3.15e-01 85.4% 43.0%
3838045 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 25.0 3.90e-01 79.2% 97.1%
3217665 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.60 35.0 3.92e-01 85.4% 74.7%
5023022 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.59 45.0 4.66e-01 81.2% 97.8%
3979258 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.57 40.0 4.17e-01 75.0% 100.0%
3165552 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.57 29.0 3.81e-01 83.3% 100.0%
3928166 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.57 35.0 3.76e-01 87.5% 72.3%
4868887 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 22.0 3.47e-01 95.8% 100.0%
3240213 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.56 34.0 3.91e-01 86.5% 82.9%
4465946 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.56 29.0 3.75e-01 87.5% 89.1%
5064066 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.54 31.0 3.65e-01 84.4% 80.9%
3786329 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.54 30.0 3.75e-01 92.7% 94.5%
5047668 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 41.0 3.15e-01 85.4% 100.0%
3994756 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.53 32.0 3.44e-01 86.5% 71.2%
3678669 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.52 43.0 2.97e-01 91.7% 60.0%
4943858 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.51 44.0 4.07e-01 97.9% 82.3%
3837942 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.51 40.0 4.03e-01 91.7% 85.0%