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NC_079174.1__YP_010844292.1__QNG95_gp01__00001

Bact-Vir

NC_079174.1__YP_010844292.1__QNG95_gp01__00001

Identity

Accession:
NC_079174 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chaseviridae› Fifivirus› Erwinia_phage_Fifi44

TaxID: 2876597

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: rep: SRR1747022_scaffold_36_prodigal-single.1__X__X__00131__D11-62
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 64.0 5.93e-01 100.0% 92.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 64.0 6.02e-01 100.0% 96.8%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 5.72e-01 100.0% 98.4%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 5.04e-01 94.1% 67.5%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.68 59.0 5.81e-01 98.0% 96.3%
1vs6C02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.06e-01 100.0% 77.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.20e-01 100.0% 89.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.03e-01 100.0% 89.9%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 3.82e-01 86.3% 49.6%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.63 43.0 4.45e-01 70.6% 82.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.65e-01 100.0% 89.3%
2gcuA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.61 49.0 3.22e-01 90.2% 65.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 4.46e-01 84.3% 96.6%
4efzB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 48.0 3.03e-01 90.2% 62.6%
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.59 45.0 2.68e-01 82.4% 14.1%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 39.0 3.33e-01 70.6% 41.4%
5yhhA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 51.0 3.43e-01 100.0% 74.4%
2r61A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 3.57e-01 72.5% 57.5%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 50.0 4.18e-01 100.0% 72.2%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 49.0 3.28e-01 100.0% 68.1%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.56 41.0 3.14e-01 80.4% 86.6%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 43.0 3.66e-01 90.2% 91.2%
1pjzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 33.0 2.23e-01 72.5% 14.4%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.54 39.0 3.25e-01 78.4% 83.2%
1zkpC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 39.0 2.64e-01 84.3% 26.5%
3kw3B01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.52 43.0 3.23e-01 100.0% 59.9%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 37.0 3.44e-01 82.4% 93.2%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.51 39.0 3.31e-01 94.1% 88.9%
1y00A00 2.60.40.4380 Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA 0.51 36.0 3.49e-01 76.5% 86.9%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 35.0 3.40e-01 74.5% 67.7%
4divS02 2.60.120.860 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.46e-01 100.0% 85.6%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 64.0 6.30e-01 92.2% 90.9%
5050433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 62.0 6.60e-01 94.1% 100.0%
4972823 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 64.0 6.45e-01 94.1% 96.0%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 65.0 6.37e-01 94.1% 94.5%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.15e-01 92.2% 89.1%
3486330 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 65.0 6.56e-01 94.1% 96.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.22e-01 94.1% 90.9%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 64.0 6.27e-01 94.1% 94.5%
4524363 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 64.0 6.01e-01 100.0% 93.8%
5040416 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.40e-01 94.1% 98.0%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.74 63.0 5.90e-01 100.0% 93.8%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 63.0 5.88e-01 100.0% 96.9%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 62.0 6.08e-01 94.1% 89.1%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 64.0 5.92e-01 100.0% 93.8%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 6.00e-01 94.1% 90.9%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 62.0 5.79e-01 100.0% 96.9%
3396951 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.72 60.0 3.52e-01 92.2% 16.2%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.90e-01 92.2% 90.9%
4369736 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 55.0 5.78e-01 90.2% 93.3%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 62.0 5.78e-01 100.0% 93.8%
5042477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 6.09e-01 92.2% 100.0%
5056706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 59.0 6.00e-01 94.1% 96.0%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 56.0 5.95e-01 86.3% 100.0%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 59.0 5.53e-01 94.1% 84.6%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 62.0 5.81e-01 100.0% 93.8%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.85e-01 94.1% 90.9%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 60.0 5.61e-01 100.0% 93.8%
3211944 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.71 58.0 3.50e-01 92.2% 97.1%
3225816 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 55.0 5.00e-01 86.3% 94.3%
4010317 4.1.1.395 ↗ beta barrels › SH3 › SH3 › SH3 › PF27398 0.70 60.0 5.57e-01 100.0% 75.4%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 60.0 5.66e-01 100.0% 93.8%
3961546 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 61.0 5.66e-01 98.0% 89.2%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.71e-01 94.1% 85.5%
3268856 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 57.0 3.50e-01 90.2% 29.8%
3931904 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.69 58.0 5.75e-01 94.1% 87.3%
5044373 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.54e-01 94.1% 86.7%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.68 57.0 5.24e-01 100.0% 88.6%
3624698 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.68 55.0 3.28e-01 90.2% 26.2%
3507373 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.67 48.0 4.26e-01 76.5% 89.3%
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.11e-01 100.0% 66.3%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.67 55.0 4.91e-01 100.0% 77.5%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.67e-01 98.0% 94.5%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.51e-01 100.0% 82.5%
4976896 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 56.0 4.63e-01 96.1% 70.5%
5063537 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 55.0 5.29e-01 98.0% 83.3%
3590911 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.01e-01 94.1% 75.7%
3935325 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 54.0 3.31e-01 92.2% 27.7%
3633533 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.65 51.0 3.19e-01 92.2% 30.4%
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.57e-01 94.1% 100.0%
3638043 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 50.0 3.19e-01 88.2% 25.4%
3899335 356.1.1.2 ↗ few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors › VWF 0.64 39.0 4.41e-01 74.5% 88.6%
3207383 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 49.0 3.11e-01 88.2% 24.0%
4956032 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.64 46.0 4.35e-01 100.0% 65.0%
3289363 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.63 48.0 4.53e-01 98.0% 68.3%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.63 52.0 5.03e-01 100.0% 85.0%
3960335 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.63 48.0 4.32e-01 100.0% 60.0%
4968500 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.62 47.0 4.44e-01 100.0% 66.7%
3629867 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 54.0 3.30e-01 100.0% 25.2%
1685099 1.1.7.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NeqB_N 0.59 46.0 4.46e-01 98.0% 74.6%
7161 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.58 39.0 3.33e-01 70.6% 41.4%
4938531 247.1.1.30 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.58 39.0 2.81e-01 70.6% 40.3%
3634374 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 47.0 4.83e-01 92.2% 92.0%
4854958 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 50.0 4.13e-01 100.0% 68.8%
4943872 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.56 49.0 3.59e-01 100.0% 46.4%
3282992 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.55 46.0 3.65e-01 94.1% 55.6%
5064404 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.55 44.0 4.25e-01 100.0% 76.7%
4316228 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.54 38.0 3.11e-01 76.5% 59.0%
4941022 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.52 41.0 2.87e-01 100.0% 40.9%