←Back to structures

NC_079175.1__YP_010844411.1__QNG96_gp42__00042

Bact-Vir

NC_079175.1__YP_010844411.1__QNG96_gp42__00042

Identity

Accession:
NC_079175 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chaseviridae› Carltongylesvirus› Escherichia_phage_PO103-1

TaxID: 2961702

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-75
PDB
Domain cluster: rep: MN158212.1__QGH77217.1__X__00037__D2-65
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 4.55e-01 100.0% 81.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.36e-01 100.0% 80.0%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 39.0 3.60e-01 100.0% 52.5%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.58 46.0 3.77e-01 89.2% 93.2%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 37.0 4.11e-01 91.9% 94.2%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 37.0 4.01e-01 93.2% 86.4%
5jpnC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 47.0 3.76e-01 97.3% 71.3%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 35.0 3.90e-01 95.9% 94.1%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.79e-01 85.1% 95.0%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.11e-01 100.0% 70.3%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 37.0 3.95e-01 93.2% 85.9%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 37.0 3.21e-01 74.3% 75.0%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.78e-01 87.8% 91.3%
1x6mC00 3.90.1590.10 Alpha Beta › Alpha-Beta Complex › glutathione-dependent formaldehyde- activating enzyme (gfa) › glutathione-dependent formaldehyde- activating enzyme (gfa) 0.53 45.0 3.43e-01 100.0% 56.7%
1o7iB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.54e-01 83.8% 83.3%
3slzA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 40.0 3.55e-01 85.1% 71.1%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.99e-01 100.0% 77.9%
3ga7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 38.0 2.55e-01 82.4% 26.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3738575 2003.1.5.71 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 0.64 49.0 3.22e-01 81.1% 86.3%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 46.0 5.05e-01 98.6% 98.3%
4608466 2003.1.5.71 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 0.64 48.0 3.17e-01 81.1% 82.1%
3645842 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.61 46.0 4.57e-01 100.0% 77.5%
3937611 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.59 44.0 3.98e-01 82.4% 78.2%
3933744 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.59 44.0 3.98e-01 82.4% 79.1%
3931849 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.58 43.0 3.74e-01 82.4% 68.8%
3845542 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.58 50.0 4.61e-01 100.0% 81.0%
5040518 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 35.0 4.00e-01 87.8% 90.0%
3437430 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 36.0 3.80e-01 89.2% 73.8%
3486271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 35.0 3.38e-01 100.0% 52.2%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 49.0 4.86e-01 100.0% 93.8%
4163458 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 36.0 3.96e-01 91.9% 89.1%
3724349 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.56 40.0 3.35e-01 78.4% 60.0%
3934416 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.55 39.0 3.50e-01 78.4% 62.5%
3729270 9.14.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › Lipocalin_5 0.55 46.0 3.69e-01 97.3% 92.5%
5012485 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.54 42.0 4.27e-01 100.0% 88.0%
4602887 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 4.23e-01 86.5% 98.6%
4451770 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.53 45.0 3.58e-01 100.0% 58.8%
3579212 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.53 42.0 3.77e-01 87.8% 77.1%
3970479 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.53 42.0 4.22e-01 89.2% 86.7%
4159881 220.1.1.197 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.52 45.0 4.19e-01 100.0% 81.1%
4990844 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 42.0 3.83e-01 94.6% 81.0%
4504920 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.51 42.0 3.97e-01 100.0% 77.8%
3234434 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.51 39.0 2.82e-01 90.5% 91.9%
3671367 5.1.4.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.50 40.0 2.65e-01 90.5% 25.1%
4238279 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.50 38.0 3.38e-01 85.1% 90.4%