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NC_079184.1__YP_010845030.1__QNH05_gp08__00008

Bact-Vir

NC_079184.1__YP_010845030.1__QNH05_gp08__00008

Identity

Accession:
NC_079184 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chaseviridae› Carltongylesvirus› Escherichia_phage_vB_EcoM_DE15

TaxID: 3003366

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-81
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l9vC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.67 49.0 3.63e-01 79.1% 48.1%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 43.0 4.83e-01 82.1% 97.9%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 50.0 5.21e-01 86.6% 95.0%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 52.0 5.41e-01 94.0% 100.0%
4pxhB00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.63 43.0 4.20e-01 71.6% 84.0%
1ussA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.70e-01 91.0% 87.5%
2mr7A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.62 43.0 3.93e-01 73.1% 70.3%
2js9A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.62 47.0 4.50e-01 85.1% 86.4%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.61 49.0 4.50e-01 89.6% 75.3%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.61 48.0 4.88e-01 91.0% 96.9%
4behA01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 44.0 4.54e-01 86.6% 84.4%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.60 45.0 3.90e-01 95.5% 48.7%
4neoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.59 42.0 4.01e-01 76.1% 80.7%
2c5uA02 1.10.3550.20 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › 0.59 42.0 3.48e-01 85.1% 39.7%
1ng6A02 1.10.10.410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 43.0 4.60e-01 83.6% 94.7%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 45.0 4.55e-01 86.6% 83.3%
7x0fB01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.59 43.0 4.20e-01 77.6% 87.7%
1x4pA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.58 47.0 4.77e-01 100.0% 92.4%
3ru0A01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.58 40.0 3.22e-01 73.1% 89.6%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.57 47.0 4.44e-01 92.5% 74.7%
3i5pA03 1.20.120.1880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain 0.57 43.0 2.99e-01 83.6% 24.2%
3h37A03 1.20.58.1960 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 3.42e-01 94.0% 42.2%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.56 45.0 4.31e-01 95.5% 82.7%
1t3qA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.55 44.0 4.24e-01 92.5% 79.0%
1wviA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 43.0 3.34e-01 83.6% 68.3%
5gp9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 36.0 3.96e-01 73.1% 95.8%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.54 42.0 4.13e-01 92.5% 96.2%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.54 40.0 3.74e-01 82.1% 68.6%
3q91B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 44.0 3.60e-01 97.0% 48.9%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 41.0 3.32e-01 88.1% 42.3%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 33.0 3.30e-01 77.6% 60.3%
6cxtB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 46.0 3.91e-01 100.0% 64.3%
4gr6B00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.52 37.0 3.21e-01 100.0% 47.6%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.52 38.0 3.68e-01 77.6% 75.7%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 3.54e-01 98.5% 89.9%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.51 43.0 3.56e-01 100.0% 85.1%
2lrdA00 1.10.10.1840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 34.0 3.52e-01 70.1% 77.0%
2qq8A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.51 33.0 3.00e-01 70.1% 45.8%
6gpxB00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 43.0 2.95e-01 100.0% 66.9%
3nrkA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.50 36.0 2.65e-01 79.1% 70.3%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3732543 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.79 59.0 5.99e-01 77.6% 80.0%
3692546 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.78 55.0 6.28e-01 76.1% 98.0%
3693971 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.78 60.0 6.60e-01 88.1% 100.0%
3973616 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 54.0 5.65e-01 80.6% 81.7%
3334149 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 57.0 6.12e-01 85.1% 98.2%
3909922 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.76 53.0 5.87e-01 79.1% 98.0%
4952808 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 5.99e-01 80.6% 94.5%
5021354 101.1.2.619 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.75 54.0 5.52e-01 82.1% 78.5%
3366917 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.75 56.0 6.07e-01 86.6% 100.0%
3884711 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 5.70e-01 83.6% 83.1%
3933926 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 54.0 5.54e-01 83.6% 80.0%
3814136 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 56.0 5.98e-01 86.6% 100.0%
5003693 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 55.0 5.65e-01 83.6% 83.1%
5008720 101.1.1.548 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.74 55.0 5.63e-01 83.6% 83.1%
3198858 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 5.56e-01 83.6% 78.6%
3901880 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 53.0 5.38e-01 82.1% 78.5%
5070167 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 52.0 5.64e-01 80.6% 90.9%
3203378 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 59.0 5.97e-01 88.1% 89.2%
3422646 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 56.0 5.89e-01 88.1% 95.0%
5007660 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.73 55.0 5.60e-01 83.6% 83.1%
3908865 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.72 51.0 5.46e-01 77.6% 89.1%
3455407 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 54.0 5.82e-01 86.6% 100.0%
3738343 101.1.1.79 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.72 56.0 5.84e-01 85.1% 93.3%
3958566 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.72 57.0 5.16e-01 86.6% 78.9%
4014593 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 5.87e-01 86.6% 100.0%
3467989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 56.0 5.80e-01 89.6% 96.7%
3454767 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 5.73e-01 86.6% 100.0%
4966213 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 5.49e-01 83.6% 84.6%
3578362 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.71 55.0 5.35e-01 85.1% 80.0%
3593172 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 5.57e-01 95.5% 84.7%
3789626 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 5.59e-01 85.1% 90.8%
3428283 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 6.00e-01 94.0% 100.0%
4953748 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 5.29e-01 83.6% 96.0%
3504389 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 62.0 5.87e-01 98.5% 86.3%
4995581 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 55.0 4.88e-01 86.6% 77.0%
3924709 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.71 54.0 5.46e-01 83.6% 89.2%
3955434 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 49.0 5.40e-01 82.1% 98.0%
3501945 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 61.0 6.22e-01 97.0% 100.0%
3618386 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 45.0 5.40e-01 70.1% 100.0%
4994794 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 56.0 5.41e-01 88.1% 98.7%
4031678 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.69 55.0 5.64e-01 86.6% 100.0%
3613393 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.44e-01 94.0% 90.0%
3621586 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 5.34e-01 86.6% 92.7%
4014609 101.1.1.79 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.69 55.0 5.55e-01 91.0% 90.8%
3210355 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.69 48.0 4.11e-01 73.1% 61.9%
5049118 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.65e-01 98.5% 93.8%
3330562 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 58.0 5.61e-01 100.0% 86.7%
3534466 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.68 56.0 5.75e-01 94.0% 98.5%
4926838 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.68 53.0 5.37e-01 88.1% 86.2%
3465761 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.68 48.0 3.89e-01 74.6% 78.5%
3620979 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 52.0 5.63e-01 83.6% 100.0%
3417440 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.68 54.0 4.37e-01 89.6% 77.8%
3845947 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 5.36e-01 85.1% 98.3%
3453546 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 52.0 5.30e-01 89.6% 90.8%
3464617 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 5.40e-01 89.6% 98.3%
3224103 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 54.0 4.49e-01 92.5% 92.8%
3311830 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.66 49.0 3.94e-01 80.6% 77.8%
3636036 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 51.0 5.40e-01 83.6% 95.0%
4975020 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.66 55.0 4.46e-01 98.5% 47.4%
5050956 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 58.0 3.71e-01 98.5% 89.2%
3961879 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.65 46.0 4.08e-01 73.1% 66.3%
3632862 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 57.0 4.89e-01 98.5% 73.6%
3173907 2007.2.3.30 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PF29454 0.65 57.0 3.99e-01 100.0% 29.1%
4889887 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.65 51.0 4.02e-01 89.6% 39.7%
5046292 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.28e-01 95.5% 95.0%
3619546 3712.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.64 45.0 4.63e-01 74.6% 76.9%
3582699 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.64 47.0 4.23e-01 77.6% 71.1%
4929815 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.96e-01 82.1% 89.2%
5053313 4156.1.1.7 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.63 53.0 3.96e-01 92.5% 76.8%
3730451 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 51.0 4.84e-01 89.6% 90.0%
4953119 101.1.2.805 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26350 0.63 52.0 3.92e-01 97.0% 45.0%
4317711 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.62 44.0 4.11e-01 76.1% 80.0%
3226857 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.61 47.0 4.46e-01 89.6% 68.2%
5028090 610.3.1.0 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.61 46.0 3.62e-01 82.1% 53.8%
3927392 198.1.1.1 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.60 48.0 4.56e-01 91.0% 80.0%
3286911 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.70e-01 92.5% 95.7%
4034220 632.2.1.5 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 0.56 36.0 3.57e-01 77.6% 62.9%