←Back to structures

NC_079184.1__YP_010845046.1__QNH05_gp24__00024

Bact-Vir

NC_079184.1__YP_010845046.1__QNH05_gp24__00024

Identity

Accession:
NC_079184 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chaseviridae› Carltongylesvirus› Escherichia_phage_vB_EcoM_DE15

TaxID: 3003366

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-115
PDB
Domain cluster: rep: NC_047791.1__YP_009788032.1__HOR42_gp17__00017__D48-135
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.74 64.0 6.62e-01 98.9% 98.9%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.74 68.0 5.60e-01 100.0% 72.4%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 47.0 3.33e-01 81.9% 95.8%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.60 48.0 4.96e-01 97.9% 92.1%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.60 54.0 4.73e-01 100.0% 97.2%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 4.33e-01 97.9% 73.5%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.59 47.0 4.70e-01 98.9% 84.0%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.57 46.0 4.17e-01 100.0% 63.2%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.41e-01 92.6% 90.0%
4gklA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 41.0 4.28e-01 78.7% 85.2%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 48.0 4.22e-01 100.0% 83.6%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 42.0 4.36e-01 97.9% 88.4%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 3.10e-01 92.6% 41.5%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.54 45.0 4.23e-01 92.6% 72.5%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.95e-01 90.4% 41.1%
3ozqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 45.0 3.74e-01 94.7% 82.4%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 37.0 2.66e-01 73.4% 86.3%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.51 44.0 4.36e-01 100.0% 95.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.50 45.0 3.97e-01 98.9% 88.6%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.50 44.0 3.84e-01 100.0% 63.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3471722 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.69 62.0 5.79e-01 100.0% 94.8%
3587732 9.6.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Staphostatin › Staphostatin 0.66 59.0 5.61e-01 98.9% 94.5%
3585414 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.66 50.0 4.74e-01 100.0% 68.2%
1891431 9.1.1.28 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Pallilysin 0.65 59.0 5.36e-01 100.0% 77.6%
3275492 5.1.4.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.64 52.0 3.32e-01 85.1% 62.4%
3222106 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 53.0 4.85e-01 89.4% 76.7%
5033243 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.63 48.0 5.10e-01 100.0% 97.5%
1833882 9.4.1.3 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.62 51.0 5.15e-01 97.9% 90.3%
3543416 3794.1.1.1 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.62 51.0 4.45e-01 100.0% 58.6%
4003478 62.1.1.1 ↗ beta meanders › Carbonic anhydrase › Carbonic anhydrase › Carbonic anhydrase › Carb_anhydrase 0.61 51.0 3.89e-01 91.5% 82.1%
3769483 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 54.0 4.94e-01 98.9% 96.0%
3404988 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.61 51.0 4.51e-01 100.0% 63.7%
4946840 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 50.0 4.70e-01 89.4% 76.5%
4951171 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.60 38.0 4.30e-01 76.6% 85.7%
3894826 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.59 50.0 4.78e-01 93.6% 82.7%
5000056 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 50.0 4.63e-01 93.6% 77.5%
5043413 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.58 51.0 4.86e-01 100.0% 86.4%
4927158 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 2.82e-01 84.0% 87.0%
3814061 5.1.3.265 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_FKB95 0.57 52.0 3.57e-01 100.0% 88.7%
3520852 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.57 50.0 4.35e-01 100.0% 62.7%
4563304 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.56 50.0 3.43e-01 97.9% 95.1%
4003932 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.56 51.0 4.67e-01 100.0% 76.7%
3799335 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.55 45.0 3.59e-01 91.5% 85.9%
4960303 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 40.0 4.09e-01 81.9% 83.2%
3660454 5.1.5.96 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.54 41.0 2.97e-01 83.0% 49.8%
185584 3385.1.1.1 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › AltA1 0.52 44.0 3.99e-01 94.7% 87.7%
3257390 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 43.0 3.01e-01 91.5% 46.8%
4507316 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.51 40.0 3.78e-01 100.0% 69.6%
3190822 220.1.1.153 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.51 45.0 3.84e-01 100.0% 76.1%