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NC_079188.1__YP_010845320.1__QNH09_gp38__00038
Bact-VirNC_079188.1__YP_010845320.1__QNH09_gp38__00038
Identity
- Accession:
- NC_079188 ↗
- Kingdom:
- phage
Quality
65.7
mean pLDDT
Taxonomy
TaxID: 2822864
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-52
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 72.0 | 6.98e-01 | 98.0% | 83.9% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.85 | 76.0 | 5.59e-01 | 100.0% | 40.8% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.83 | 67.0 | 4.69e-01 | 92.0% | 29.3% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 72.0 | 6.96e-01 | 100.0% | 94.7% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 62.0 | 5.66e-01 | 88.0% | 65.7% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.77 | 62.0 | 5.32e-01 | 86.0% | 58.4% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.77 | 64.0 | 5.51e-01 | 94.0% | 58.2% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.76 | 60.0 | 5.59e-01 | 84.0% | 72.1% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 58.0 | 5.53e-01 | 84.0% | 70.7% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 58.0 | 5.40e-01 | 84.0% | 66.1% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.75 | 67.0 | 5.50e-01 | 98.0% | 80.5% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.75 | 64.0 | 4.23e-01 | 100.0% | 49.3% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 60.0 | 4.51e-01 | 86.0% | 40.7% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 63.0 | 6.13e-01 | 100.0% | 98.2% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.73 | 45.0 | 3.44e-01 | 72.0% | 29.4% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 61.0 | 4.35e-01 | 92.0% | 32.2% |
| 2a26B01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.72 | 48.0 | 5.07e-01 | 70.0% | 84.1% |
| 4l9mA03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.71 | 57.0 | 5.06e-01 | 94.0% | 97.4% |
| 2yfqB01 | 1.10.8.1210 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.70 | 44.0 | 4.38e-01 | 84.0% | 61.5% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.69 | 61.0 | 5.18e-01 | 98.0% | 93.7% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 62.0 | 5.60e-01 | 100.0% | 88.1% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.68 | 55.0 | 5.04e-01 | 100.0% | 67.7% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 58.0 | 5.42e-01 | 98.0% | 90.5% |
| 3qxzA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.66 | 53.0 | 5.07e-01 | 94.0% | 96.7% |
| 1vibA00 | 1.10.287.120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like | 0.66 | 53.0 | 5.20e-01 | 100.0% | 83.6% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.64 | 57.0 | 5.06e-01 | 100.0% | 80.6% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 57.0 | 5.19e-01 | 98.0% | 75.4% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 45.0 | 4.06e-01 | 76.0% | 55.2% |
| 1dciA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.64 | 55.0 | 5.12e-01 | 98.0% | 96.8% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 43.0 | 4.10e-01 | 80.0% | 62.1% |
| 2cwoA01 | 1.20.58.1200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain | 0.61 | 54.0 | 4.78e-01 | 100.0% | 67.6% |
| 5c9gA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.61 | 51.0 | 4.89e-01 | 94.0% | 96.5% |
| 2l35A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.59 | 49.0 | 4.68e-01 | 100.0% | 82.5% |
| 1rsoA01 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 50.0 | 5.01e-01 | 100.0% | 100.0% |
| 1rajA01 | 4.10.880.10 | Few Secondary Structures › Irregular › Poliovirus 3D polymerase; domain 1 (Nucleotidyltransferase) › Poliovirus 3D polymerase Domain 1 (Nucleotidyltransferase) | 0.54 | 39.0 | 4.18e-01 | 76.0% | 86.4% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.54 | 41.0 | 4.01e-01 | 86.0% | 75.9% |
| 3hssA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 45.0 | 2.87e-01 | 100.0% | 56.6% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3165232 | 1078.1.1.0 ↗ | extended segments › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit | 0.89 | 73.0 | 7.64e-01 | 90.0% | 100.0% |
| 4541657 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.87 | 78.0 | 6.63e-01 | 100.0% | 63.7% |
| 3995509 | 3730.1.1.0 ↗ | alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain | 0.87 | 73.0 | 6.76e-01 | 92.0% | 73.0% |
| 3992719 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.86 | 77.0 | 6.30e-01 | 100.0% | 60.0% |
| 4031490 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.84 | 75.0 | 6.55e-01 | 100.0% | 66.7% |
| 3479118 | 605.8.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like | 0.84 | 70.0 | 7.07e-01 | 96.0% | 92.0% |
| 3879536 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.84 | 73.0 | 4.36e-01 | 100.0% | 15.0% |
| 3237521 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.83 | 72.0 | 4.55e-01 | 100.0% | 19.6% |
| 4026047 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.81 | 72.0 | 6.04e-01 | 100.0% | 58.8% |
| 4132487 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.80 | 63.0 | 5.83e-01 | 98.0% | 69.2% |
| 4940728 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.79 | 61.0 | 6.12e-01 | 86.0% | 88.0% |
| 4354962 | 3390.1.1.0 ↗ | extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT | 0.77 | 63.0 | 6.38e-01 | 90.0% | 94.0% |
| 3777150 | 3291.1.1.125 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › zf-B_box | 0.77 | 67.0 | 5.05e-01 | 100.0% | 40.8% |
| 4562953 | 2004.1.1.43 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 | 0.76 | 68.0 | 4.17e-01 | 100.0% | 18.2% |
| 4276514 | 3826.1.1.88 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › CC_BshC | 0.76 | 65.0 | 5.91e-01 | 100.0% | 74.3% |
| 5002330 | 205.1.1.33 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_10 | 0.76 | 66.0 | 4.68e-01 | 100.0% | 35.5% |
| 3640538 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.75 | 59.0 | 5.36e-01 | 88.0% | 62.9% |
| 3808261 | 3826.1.1.27 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF3754 | 0.75 | 65.0 | 5.50e-01 | 100.0% | 67.1% |
| 5001192 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.75 | 63.0 | 4.31e-01 | 100.0% | 27.7% |
| 3193842 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.74 | 66.0 | 4.91e-01 | 100.0% | 68.8% |
| 4032308 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.74 | 62.0 | 4.40e-01 | 100.0% | 31.2% |
| 3854183 | 3682.1.1.0 ↗ | alpha duplicates or obligate multimers › IcmQ dimerization domain › IcmQ dimerization domain › IcmQ dimerization domain | 0.73 | 59.0 | 5.40e-01 | 100.0% | 68.6% |
| 3610706 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.71 | 60.0 | 5.08e-01 | 92.0% | 60.0% |
| 4034092 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.71 | 60.0 | 5.28e-01 | 100.0% | 64.0% |
| 4061713 | 5069.1.3.10 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › ATP-synt_I | 0.69 | 62.0 | 4.58e-01 | 100.0% | 43.2% |
| 4254477 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.68 | 62.0 | 4.85e-01 | 100.0% | 96.0% |
| 3252849 | 6055.1.1.0 ↗ | extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC | 0.68 | 52.0 | 5.22e-01 | 86.0% | 96.0% |
| 1002194 | 192.23.1.1 ↗ | alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Rop-like | 0.65 | 58.0 | 5.13e-01 | 100.0% | 81.7% |
| 3749862 | 605.1.1.178 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › TMEM215 | 0.61 | 52.0 | 4.97e-01 | 100.0% | 93.3% |
| 3281203 | 604.17.1.0 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like | 0.60 | 42.0 | 4.28e-01 | 74.0% | 76.0% |
| 3709400 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 52.0 | 3.33e-01 | 96.0% | 54.5% |