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NC_079188.1__YP_010845345.1__QNH09_gp63__00063

Bact-Vir

NC_079188.1__YP_010845345.1__QNH09_gp63__00063

Identity

Accession:
NC_079188 ↗
Kingdom:
phage

Quality

61.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chaseviridae› Phayathaivirus› Aeromonas_phage_PVN03

TaxID: 2822864

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-133
PDB
Domain cluster: rep: OQ326496.2__WDQ45522.1__X__00066__D7-128
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.75 48.0 5.19e-01 100.0% 75.7%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.72 50.0 4.45e-01 97.7% 51.1%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.70 46.0 4.17e-01 91.5% 49.7%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 36.0 4.24e-01 83.1% 72.7%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.69 48.0 4.34e-01 92.3% 53.4%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.67 47.0 5.42e-01 90.0% 97.9%
3py9A04 2.60.40.2560 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 31.0 3.93e-01 83.8% 74.4%
3if8B03 6.20.270.10 Special › Other non-globular › Carboxypeptidase Inhibitor; Chain A › 0.64 22.0 3.34e-01 77.7% 70.0%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 27.0 3.50e-01 97.7% 68.9%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.62 42.0 4.62e-01 98.5% 85.6%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 3.92e-01 81.5% 68.2%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.62 44.0 4.49e-01 93.1% 76.0%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 52.0 4.70e-01 100.0% 67.0%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 4.71e-01 100.0% 68.5%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 4.88e-01 100.0% 75.6%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 34.0 3.68e-01 86.9% 66.1%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 34.0 3.87e-01 83.8% 76.0%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 27.0 3.39e-01 96.2% 75.7%
3dmbA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 4.41e-01 99.2% 76.7%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 34.0 4.03e-01 94.6% 89.7%
7a1rA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 36.0 3.83e-01 98.5% 72.0%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.59e-01 81.5% 74.1%
3le2A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 37.0 3.73e-01 100.0% 70.2%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.53 46.0 4.45e-01 99.2% 84.5%
2wyoD02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 36.0 3.67e-01 100.0% 74.2%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988103 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.87 61.0 7.08e-01 97.7% 97.9%
3604610 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.83 42.0 5.94e-01 76.9% 100.0%
4031285 1.1.13.64 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.78 53.0 6.25e-01 99.2% 100.0%
184486 1.1.13.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.77 48.0 5.84e-01 97.7% 98.8%
3941988 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 64.0 6.84e-01 100.0% 99.1%
184471 1.1.13.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.77 50.0 6.01e-01 97.7% 100.0%
3059162 1.1.13.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.76 65.0 6.65e-01 98.5% 96.0%
2475124 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 52.0 6.09e-01 96.2% 100.0%
2468519 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 55.0 6.18e-01 96.9% 99.0%
3256920 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 45.0 4.64e-01 84.6% 64.0%
4883825 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.72 50.0 5.80e-01 99.2% 100.0%
4954551 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 61.0 6.05e-01 100.0% 88.9%
4809346 1.1.13.57 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.70 46.0 5.47e-01 82.3% 100.0%
5079559 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 56.0 5.87e-01 100.0% 99.1%
3659065 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.67 38.0 4.28e-01 80.8% 72.0%
4030848 1.1.13.52 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_1 0.66 61.0 5.65e-01 100.0% 89.6%
3589778 1.1.5.78 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_TTP_1 0.66 61.0 5.57e-01 100.0% 85.9%
3844504 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.66 36.0 4.01e-01 82.3% 65.7%
4957565 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 59.0 6.04e-01 96.9% 97.6%
3273772 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 38.0 4.66e-01 83.1% 93.7%
3825541 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.64 37.0 3.98e-01 80.8% 65.5%
3497397 395.1.1.0 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.64 25.0 3.22e-01 83.8% 60.0%
5002662 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 46.0 5.17e-01 90.8% 97.0%
3307398 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.63 36.0 3.87e-01 80.8% 65.5%
3369744 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 36.0 3.79e-01 80.8% 65.2%
4018682 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.59 54.0 4.56e-01 100.0% 71.8%
4028502 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.58 39.0 4.05e-01 81.5% 72.5%
3933721 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.58 31.0 2.90e-01 70.0% 39.4%
4936622 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.58 32.0 3.67e-01 80.0% 72.6%
3283006 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 37.0 4.08e-01 99.2% 85.0%
3384789 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.56 38.0 4.10e-01 100.0% 80.9%
3477604 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 36.0 3.38e-01 98.5% 54.4%
2374 5087.3.1.1 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.53 24.0 3.23e-01 99.2% 79.4%
3169542 11.1.1.806 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IgD2_Trs65 0.53 34.0 3.44e-01 85.4% 61.5%
3189285 220.1.1.213 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7614 0.53 35.0 3.81e-01 85.4% 81.0%
3826424 11.1.4.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 0.53 38.0 4.12e-01 100.0% 88.2%
3672469 304.55.1.18 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › ACT 0.51 38.0 3.79e-01 82.3% 74.3%
4000485 319.1.1.20 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SF3A2 0.50 35.0 3.82e-01 82.3% 84.5%
D2 high residues 135-237
PDB
D3 high residues 242-285_302-343
PDB