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NIa-Pr_protein
Euk-VirTomato_mild_mottle_virus
NIa-Pr_protein__YP_009509086__Tomato_mild_mottle_virus__178599
Identity
- Accession:
- YP_009509086 ↗
- Protein ID:
- NIa-Pr_protein
- Kingdom:
- euk
Quality
79.8
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Ipomovirus›
Tomato_mild_mottle_virus
TaxID: 178599
Cluster
View cluster (187 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-91
Domain cluster:
rep: NIa-VPg-Pro_protein__YP_002956094__Triticum_mosaic_virus__431317__D201-288_375-394
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lvmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.89 | 79.0 | 7.18e-01 | 91.8% | 74.5% |
| 2w5eA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.83 | 61.0 | 6.86e-01 | 94.1% | 100.0% |
| 1qa7A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.82 | 76.0 | 6.91e-01 | 100.0% | 84.5% |
| 2o8lA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 70.0 | 6.64e-01 | 98.8% | 99.0% |
| 2ijd101 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.77 | 68.0 | 5.23e-01 | 100.0% | 44.4% |
| 2z9iC01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.77 | 71.0 | 6.91e-01 | 100.0% | 94.6% |
| 1wqsA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.77 | 60.0 | 6.51e-01 | 100.0% | 100.0% |
| 2r0lA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.75 | 65.0 | 5.89e-01 | 94.1% | 88.5% |
| 8e7cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.75 | 63.0 | 6.45e-01 | 89.4% | 100.0% |
| 3tvjB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.74 | 64.0 | 5.94e-01 | 94.1% | 87.9% |
| 1zyoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.74 | 65.0 | 6.57e-01 | 94.1% | 100.0% |
| 1p3cA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.74 | 65.0 | 5.98e-01 | 96.5% | 88.2% |
| 2zu2A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.73 | 67.0 | 6.40e-01 | 100.0% | 90.8% |
| 2aiqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.72 | 66.0 | 5.94e-01 | 98.8% | 84.1% |
| 2o8mB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.71 | 51.0 | 5.64e-01 | 94.1% | 97.0% |
| 1ntpA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.69 | 60.0 | 5.66e-01 | 94.1% | 87.4% |
| 2ynaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.69 | 60.0 | 5.94e-01 | 94.1% | 100.0% |
| 4b6eB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.68 | 54.0 | 4.11e-01 | 89.4% | 36.6% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 57.0 | 5.19e-01 | 94.1% | 79.8% |
| 1miqA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.66 | 57.0 | 4.76e-01 | 98.8% | 88.8% |
| 1g7sA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 50.0 | 4.64e-01 | 82.4% | 78.7% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.64 | 54.0 | 4.31e-01 | 94.1% | 91.4% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.64 | 50.0 | 3.93e-01 | 83.5% | 47.1% |
| 3d30A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.64 | 51.0 | 4.70e-01 | 85.9% | 88.9% |
| 2hcjB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 49.0 | 4.81e-01 | 83.5% | 84.0% |
| 3szeA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 52.0 | 3.58e-01 | 91.8% | 39.3% |
| 3d3rA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 30.0 | 3.04e-01 | 84.7% | 47.0% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 31.0 | 3.90e-01 | 91.8% | 89.4% |
| 3su0A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.59 | 52.0 | 4.78e-01 | 98.8% | 84.8% |
| 4fxtA01 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.59 | 44.0 | 4.42e-01 | 95.3% | 80.2% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.57 | 46.0 | 4.36e-01 | 90.6% | 93.3% |
| 4x8iA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.56 | 42.0 | 4.30e-01 | 81.2% | 85.9% |
| 4m0hA01 | 2.60.120.1440 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 36.0 | 3.08e-01 | 94.1% | 40.3% |
| 2gcjA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.54 | 43.0 | 3.70e-01 | 85.9% | 56.7% |
| 3cwvA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 43.0 | 3.39e-01 | 92.9% | 80.3% |
| 5dn6I00 | 2.60.15.10 | Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal | 0.52 | 37.0 | 3.93e-01 | 83.5% | 84.0% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 39.0 | 3.47e-01 | 81.2% | 58.1% |
| 1wwhA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 36.0 | 3.80e-01 | 74.1% | 97.3% |
| 1sq2N00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.41e-01 | 78.8% | 98.2% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 257 | 1.1.5.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C4 | 0.91 | 87.0 | 6.15e-01 | 100.0% | 39.3% |
| 261 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.84 | 78.0 | 5.68e-01 | 100.0% | 43.9% |
| 134018 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.79 | 65.0 | 5.22e-01 | 100.0% | 46.3% |
| 2779726 | 1.1.17.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 | 0.79 | 69.0 | 5.19e-01 | 100.0% | 42.5% |
| 3284172 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.78 | 67.0 | 5.00e-01 | 100.0% | 38.5% |
| 3375203 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.77 | 71.0 | 4.88e-01 | 100.0% | 32.0% |
| 3276425 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.77 | 70.0 | 4.76e-01 | 100.0% | 48.3% |
| 4532481 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.74 | 67.0 | 4.58e-01 | 100.0% | 43.8% |
| 4561917 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.73 | 67.0 | 4.74e-01 | 100.0% | 40.8% |
| 1099000 | 1.1.5.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 | 0.73 | 67.0 | 5.13e-01 | 100.0% | 47.0% |
| 3404225 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.72 | 66.0 | 4.88e-01 | 100.0% | 41.9% |
| 3548075 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.72 | 66.0 | 4.65e-01 | 100.0% | 45.5% |
| 3416144 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.72 | 64.0 | 4.73e-01 | 100.0% | 39.0% |
| 3397229 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.72 | 65.0 | 4.71e-01 | 100.0% | 40.0% |
| 4852372 | 1.1.5.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 | 0.72 | 66.0 | 4.98e-01 | 100.0% | 47.6% |
| 3545090 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.72 | 65.0 | 4.76e-01 | 100.0% | 38.6% |
| 3388883 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.71 | 66.0 | 4.67e-01 | 100.0% | 45.4% |
| 4587424 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.70 | 64.0 | 4.67e-01 | 100.0% | 44.5% |
| 4791571 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.68 | 62.0 | 5.43e-01 | 100.0% | 78.4% |
| 4425367 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.68 | 49.0 | 4.53e-01 | 76.5% | 92.7% |
| 5006034 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 57.0 | 5.38e-01 | 94.1% | 98.1% |
| 4988102 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.65 | 52.0 | 4.83e-01 | 89.4% | 99.1% |
| 5006031 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 54.0 | 4.93e-01 | 94.1% | 98.3% |
| 1096951 | 1.1.5.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 | 0.63 | 52.0 | 3.74e-01 | 91.8% | 46.9% |
| 4988103 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.63 | 53.0 | 5.14e-01 | 92.9% | 100.0% |
| 4952909 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 50.0 | 4.77e-01 | 92.9% | 84.8% |
| 3887129 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 43.0 | 4.21e-01 | 82.4% | 68.9% |
| 3879529 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.57 | 47.0 | 3.22e-01 | 97.6% | 69.1% |
| 165201 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.56 | 38.0 | 3.41e-01 | 70.6% | 64.5% |
| 3892522 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 39.0 | 3.45e-01 | 71.8% | 74.2% |
| 3995220 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 47.0 | 3.88e-01 | 96.5% | 93.8% |
| 3878637 | 11.1.1.143 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Receptor_2B4 | 0.54 | 37.0 | 3.57e-01 | 71.8% | 80.0% |
| 3211296 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 4.16e-01 | 95.3% | 98.3% |
| 3218584 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 41.0 | 4.28e-01 | 95.3% | 100.0% |
| 4081039 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.52 | 31.0 | 3.40e-01 | 80.0% | 72.9% |
D2
medium
residues 92-195
Domain cluster:
rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00863.26 best | Peptidase_C4 | 44.2 | 2.00e-11 | 96.2% | 39.8% |