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NIa-Pro

Euk-Vir

Rose_yellow_mosaic_virus

NIa-Pro__YP_006908986__Rose_yellow_mosaic_virus__1048434

Identity

Accession:
YP_006908986 ↗
Protein ID:
NIa-Pro
Kingdom:
euk

Quality

76.8 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Roymovirus› Rose_yellow_mosaic_virus

TaxID: 1048434

Cluster

View cluster (187 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-99_186-200
PDB
Domain cluster: rep: NIa-VPg-Pro_protein__YP_002956094__Triticum_mosaic_virus__431317__D201-288_375-394
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lvmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.84 76.0 7.56e-01 95.1% 92.5%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 49.0 5.94e-01 75.5% 100.0%
1qa7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 68.0 6.68e-01 97.1% 94.5%
8e7cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 51.0 5.68e-01 74.5% 97.5%
1p3cA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 64.0 6.23e-01 99.0% 100.0%
2r0lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 62.0 6.01e-01 96.1% 100.0%
2o8mB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 43.0 5.18e-01 82.4% 97.0%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 55.0 5.64e-01 84.3% 89.8%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 62.0 6.02e-01 99.0% 100.0%
2olgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 59.0 5.46e-01 95.1% 100.0%
7u5bJ01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 49.0 5.51e-01 95.1% 100.0%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 51.0 5.51e-01 81.4% 100.0%
1miqA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.65 51.0 4.54e-01 85.3% 86.8%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 48.0 4.66e-01 79.4% 79.8%
5n70A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.64 50.0 4.35e-01 85.3% 88.8%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 55.0 3.88e-01 100.0% 68.5%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.60 47.0 3.93e-01 83.3% 92.0%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 40.0 4.00e-01 71.6% 79.6%
4fxtA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.57 37.0 3.98e-01 79.4% 77.9%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 51.0 4.09e-01 100.0% 89.6%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.57 44.0 3.77e-01 85.3% 92.0%
3su0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 44.0 4.32e-01 84.3% 85.7%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.54 40.0 4.02e-01 79.4% 96.2%
2pmwB02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.51 32.0 2.56e-01 72.5% 30.3%
1wh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.45e-01 71.6% 90.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
257 1.1.5.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C4 0.84 80.0 6.05e-01 100.0% 84.9%
261 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.74 69.0 5.32e-01 100.0% 97.2%
3375203 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.74 68.0 4.90e-01 100.0% 78.5%
3909175 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 65.0 4.67e-01 97.1% 96.5%
3580932 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 62.0 4.53e-01 97.1% 94.0%
4587424 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 63.0 4.87e-01 100.0% 97.3%
1099000 1.1.5.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.68 57.0 4.63e-01 90.2% 89.2%
4852372 1.1.5.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.67 56.0 4.51e-01 90.2% 88.0%
134018 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.64 59.0 4.98e-01 100.0% 95.7%
1322884 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.64 50.0 3.81e-01 84.3% 57.6%
3522295 1.1.1.2 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp,A1_Propeptide 0.63 50.0 3.41e-01 85.3% 35.6%
160388 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.63 47.0 4.46e-01 79.4% 73.4%
2125379 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.63 49.0 4.36e-01 85.3% 90.1%
3649494 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.60 47.0 3.19e-01 84.3% 35.7%
4988102 1.1.13.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.60 44.0 4.31e-01 77.5% 99.1%
2475124 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 41.0 4.25e-01 73.5% 100.0%
4981353 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.58 24.0 2.71e-01 73.5% 47.5%
None — 0.57 45.0 3.22e-01 85.3% 54.9%
5016434 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 30.0 3.44e-01 82.4% 73.3%
4678749 306.1.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB 0.54 33.0 3.85e-01 76.5% 95.4%
3412933 1.1.1.28 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.54 45.0 3.13e-01 95.1% 89.3%
3995220 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.88e-01 93.1% 99.4%
4425367 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.53 44.0 4.28e-01 89.2% 100.0%
138821 1.11.1.1 ↗ beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.53 41.0 3.91e-01 83.3% 88.3%
D2 medium residues 100-185
PDB
Domain cluster: rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00863.26 best Peptidase_C4 48.7 8.10e-13 100.0% 36.9%