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NIa-Pro
Euk-VirBlackberry_virus_Y
NIa-Pro__YP_851206__Blackberry_virus_Y__323118
Identity
- Accession:
- YP_851206 ↗
- Protein ID:
- NIa-Pro
- Kingdom:
- euk
Quality
76.3
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Brambyvirus›
Blackberry_virus_Y
TaxID: 323118
Cluster
View cluster (187 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-99_184-198
Domain cluster:
rep: NIa-VPg-Pro_protein__YP_002956094__Triticum_mosaic_virus__431317__D201-288_375-394
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lvmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.85 | 73.0 | 7.41e-01 | 90.7% | 93.4% |
| 2bhgA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.80 | 64.0 | 6.88e-01 | 83.2% | 100.0% |
| 3k6yA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.79 | 60.0 | 6.42e-01 | 85.0% | 92.4% |
| 2o8lA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 62.0 | 6.38e-01 | 82.2% | 99.0% |
| 1qa7A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 70.0 | 7.02e-01 | 96.3% | 100.0% |
| 3stjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 57.0 | 6.32e-01 | 76.6% | 95.3% |
| 1dleA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.74 | 65.0 | 6.10e-01 | 94.4% | 96.9% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.74 | 68.0 | 5.42e-01 | 100.0% | 96.6% |
| 3tk9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.74 | 63.0 | 6.39e-01 | 91.6% | 100.0% |
| 1wv4B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.73 | 53.0 | 4.70e-01 | 76.6% | 64.9% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.72 | 52.0 | 4.67e-01 | 73.8% | 86.7% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.72 | 54.0 | 4.38e-01 | 77.6% | 74.9% |
| 1zyoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.72 | 53.0 | 5.93e-01 | 75.7% | 100.0% |
| 2hlcA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.72 | 59.0 | 6.06e-01 | 87.9% | 97.1% |
| 1ci0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.72 | 54.0 | 4.31e-01 | 78.5% | 73.0% |
| 4ri0A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.72 | 65.0 | 5.31e-01 | 100.0% | 96.5% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.71 | 51.0 | 4.63e-01 | 74.8% | 78.9% |
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.71 | 51.0 | 4.70e-01 | 74.8% | 82.2% |
| 2zu2A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.71 | 57.0 | 5.99e-01 | 85.0% | 93.9% |
| 2i02A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.71 | 51.0 | 4.65e-01 | 74.8% | 79.3% |
| 8ct0B01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.70 | 53.0 | 4.51e-01 | 78.5% | 77.7% |
| 1t9mA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.70 | 53.0 | 4.21e-01 | 78.5% | 70.6% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 50.0 | 4.48e-01 | 74.8% | 87.1% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 50.0 | 4.67e-01 | 75.7% | 91.9% |
| 1rfeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 50.0 | 4.64e-01 | 75.7% | 83.1% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 52.0 | 4.41e-01 | 79.4% | 85.5% |
| 3gasB02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 50.0 | 4.29e-01 | 75.7% | 73.8% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 49.0 | 4.87e-01 | 74.8% | 82.5% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 50.0 | 4.36e-01 | 75.7% | 80.5% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 50.0 | 4.75e-01 | 75.7% | 84.7% |
| 2re7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 50.0 | 4.68e-01 | 76.6% | 87.9% |
| 5bncB01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 49.0 | 4.41e-01 | 74.8% | 78.5% |
| 3e4vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 49.0 | 4.12e-01 | 74.8% | 75.3% |
| 2ynaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 49.0 | 5.40e-01 | 76.6% | 100.0% |
| 5escA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 49.0 | 4.75e-01 | 76.6% | 91.6% |
| 2asfA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 49.0 | 4.66e-01 | 76.6% | 88.0% |
| 1lvoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 46.0 | 5.02e-01 | 93.5% | 89.8% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 47.0 | 4.26e-01 | 74.8% | 90.1% |
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 45.0 | 4.65e-01 | 74.8% | 82.7% |
| 1miqA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.63 | 48.0 | 4.31e-01 | 81.3% | 87.5% |
| 2hhzA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 50.0 | 4.60e-01 | 92.5% | 90.6% |
| 4ic5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 42.0 | 4.26e-01 | 76.6% | 78.8% |
| 5yjlD01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 47.0 | 4.28e-01 | 93.5% | 88.7% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.54 | 37.0 | 3.12e-01 | 70.1% | 54.3% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 30.0 | 3.72e-01 | 76.6% | 91.2% |
| 3mi6A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.51 | 39.0 | 2.86e-01 | 83.2% | 96.1% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 257 | 1.1.5.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C4 | 0.86 | 81.0 | 6.22e-01 | 100.0% | 87.7% |
| 3414359 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.80 | 69.0 | 5.01e-01 | 91.6% | 83.6% |
| 376155 | 1.1.17.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 | 0.79 | 72.0 | 5.77e-01 | 96.3% | 100.0% |
| 3405652 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.77 | 68.0 | 5.08e-01 | 93.5% | 94.7% |
| 5031837 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.77 | 70.0 | 5.10e-01 | 98.1% | 97.8% |
| 4532479 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.76 | 66.0 | 5.00e-01 | 93.5% | 91.3% |
| 3783835 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.76 | 70.0 | 5.12e-01 | 99.1% | 87.9% |
| 3246192 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.75 | 68.0 | 4.90e-01 | 96.3% | 93.9% |
| 3234434 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.75 | 68.0 | 5.02e-01 | 98.1% | 95.2% |
| 3448106 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.75 | 69.0 | 5.19e-01 | 100.0% | 92.4% |
| 3580932 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.75 | 66.0 | 4.84e-01 | 94.4% | 93.6% |
| 3997886 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.74 | 61.0 | 4.70e-01 | 86.9% | 48.9% |
| 3856305 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.74 | 65.0 | 4.95e-01 | 94.4% | 91.9% |
| 3838513 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.73 | 66.0 | 5.16e-01 | 98.1% | 97.3% |
| 140973 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.73 | 67.0 | 5.21e-01 | 100.0% | 86.8% |
| 3236876 | 1.1.5.49 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 | 0.73 | 65.0 | 4.71e-01 | 95.3% | 94.9% |
| 3477290 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.73 | 54.0 | 4.11e-01 | 76.6% | 63.0% |
| 3404225 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.73 | 66.0 | 5.21e-01 | 98.1% | 97.6% |
| 305361 | 1.1.5.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 | 0.72 | 54.0 | 4.38e-01 | 77.6% | 74.9% |
| 4999024 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.72 | 52.0 | 4.22e-01 | 74.8% | 86.0% |
| 3278636 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.71 | 52.0 | 4.57e-01 | 75.7% | 80.6% |
| 138887 | 1.1.5.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR | 0.71 | 52.0 | 5.02e-01 | 75.7% | 80.3% |
| 3955284 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.71 | 52.0 | 4.70e-01 | 75.7% | 72.9% |
| 3404828 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.70 | 53.0 | 4.32e-01 | 78.5% | 66.8% |
| 3180762 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.70 | 53.0 | 4.18e-01 | 79.4% | 72.6% |
| 4961061 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.70 | 51.0 | 4.48e-01 | 75.7% | 84.5% |
| 5028702 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.69 | 51.0 | 4.62e-01 | 75.7% | 80.7% |
| 3952438 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.69 | 50.0 | 4.56e-01 | 74.8% | 84.9% |
| 4658432 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.69 | 50.0 | 4.63e-01 | 75.7% | 79.3% |
| 5052496 | 1.1.5.36 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like | 0.69 | 50.0 | 4.39e-01 | 75.7% | 81.9% |
| 4929515 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.68 | 50.0 | 4.50e-01 | 75.7% | 90.3% |
| 4990516 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.68 | 52.0 | 4.33e-01 | 80.4% | 79.4% |
| 3288877 | 1.1.5.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 | 0.68 | 50.0 | 4.29e-01 | 76.6% | 84.2% |
| 3287194 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.67 | 49.0 | 4.15e-01 | 75.7% | 66.9% |
| 3948318 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.67 | 49.0 | 4.00e-01 | 75.7% | 59.5% |
| 2099294 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.65 | 47.0 | 4.26e-01 | 74.8% | 90.1% |
| 4047081 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.64 | 38.0 | 4.22e-01 | 96.3% | 74.1% |
| 3645174 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.64 | 48.0 | 4.19e-01 | 80.4% | 89.3% |
| 2095485 | 1.1.5.38 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C107 | 0.64 | 54.0 | 4.32e-01 | 91.6% | 89.9% |
| 3698363 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.63 | 49.0 | 4.13e-01 | 82.2% | 81.7% |
| 3582036 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.60 | 45.0 | 3.60e-01 | 80.4% | 57.8% |
| 3281870 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.60 | 44.0 | 4.09e-01 | 76.6% | 70.4% |
| 3767794 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.60 | 44.0 | 3.74e-01 | 76.6% | 64.7% |
| 5048078 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.59 | 51.0 | 4.29e-01 | 93.5% | 87.7% |
D2
medium
residues 100-183_225-237
Domain cluster:
rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00863.26 best | Peptidase_C4 | 37.6 | 2.00e-09 | 97.9% | 38.9% |
| PF12380.15 | Peptidase_C62 | 20.7 | 2.80e-04 | 78.3% | 10.6% |