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NIa-Pro_protein
Euk-VirChinese_yam_necrotic_mosaic_virus
NIa-Pro_protein__YP_006590100__Chinese_yam_necrotic_mosaic_virus__128818
Identity
- Accession:
- YP_006590100 ↗
- Protein ID:
- NIa-Pro_protein
- Kingdom:
- euk
Quality
82.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Macluravirus›
Chinese_yam_necrotic_mosaic_virus
TaxID: 128818
Cluster
View cluster (187 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-89_181-196_206-212
Domain cluster:
rep: NIa-VPg-Pro_protein__YP_002956094__Triticum_mosaic_virus__431317__D201-288_375-394
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lvmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 70.0 | 6.79e-01 | 95.9% | 100.0% |
| 4yo1A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 57.0 | 5.96e-01 | 76.3% | 87.6% |
| 3nziA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.78 | 57.0 | 5.53e-01 | 76.3% | 81.1% |
| 5hmaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.77 | 56.0 | 5.92e-01 | 76.3% | 93.1% |
| 3f1sB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.76 | 56.0 | 5.74e-01 | 76.3% | 96.8% |
| 2aiqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.76 | 61.0 | 5.75e-01 | 84.5% | 98.2% |
| 1l1jA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.75 | 55.0 | 5.16e-01 | 76.3% | 88.1% |
| 3k6yA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.75 | 55.0 | 5.62e-01 | 76.3% | 83.7% |
| 2r0lA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.74 | 60.0 | 5.65e-01 | 85.6% | 98.2% |
| 2zu2A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.73 | 54.0 | 5.39e-01 | 76.3% | 84.7% |
| 2o8mB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.73 | 47.0 | 5.55e-01 | 76.3% | 97.0% |
| 4rqyA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.73 | 61.0 | 5.61e-01 | 89.7% | 84.6% |
| 3tvjB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 58.0 | 5.67e-01 | 88.7% | 100.0% |
| 2ynaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 51.0 | 5.32e-01 | 76.3% | 98.9% |
| 1p3cA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.69 | 57.0 | 5.47e-01 | 88.7% | 97.3% |
| 5y2dA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 57.0 | 5.32e-01 | 89.7% | 80.0% |
| 2xrcC04 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 56.0 | 4.56e-01 | 88.7% | 100.0% |
| 5lpeB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 55.0 | 5.65e-01 | 87.6% | 98.9% |
| 1elvA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 54.0 | 5.44e-01 | 86.6% | 100.0% |
| 2qf4A02 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.67 | 47.0 | 4.88e-01 | 73.2% | 91.2% |
| 4q63A00 | 2.40.10.430 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.66 | 48.0 | 4.92e-01 | 76.3% | 91.4% |
| 1ntpA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 57.0 | 5.59e-01 | 92.8% | 100.0% |
| 3su0A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.65 | 48.0 | 4.56e-01 | 76.3% | 84.8% |
| 3h09A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 50.0 | 3.51e-01 | 85.6% | 82.8% |
| 1yg9A03 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.63 | 43.0 | 4.07e-01 | 70.1% | 97.4% |
| 4b6eB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 52.0 | 4.04e-01 | 89.7% | 76.2% |
| 2ijd101 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 56.0 | 4.50e-01 | 97.9% | 65.6% |
| 1miqA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.60 | 43.0 | 3.81e-01 | 76.3% | 88.8% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.60 | 43.0 | 4.26e-01 | 76.3% | 97.1% |
| 1smrA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.60 | 43.0 | 3.75e-01 | 76.3% | 89.7% |
| 7tbdB02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.54 | 38.0 | 3.30e-01 | 75.3% | 79.8% |
| 4fxtA01 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.54 | 36.0 | 3.77e-01 | 70.1% | 76.7% |
| 1hkqA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.46e-01 | 72.2% | 86.4% |
| 4lrzE02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 31.0 | 3.21e-01 | 70.1% | 60.6% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3649347 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.84 | 62.0 | 5.34e-01 | 76.3% | 71.0% |
| 257 | 1.1.5.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C4 | 0.80 | 75.0 | 5.61e-01 | 100.0% | 93.6% |
| 3957702 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.78 | 57.0 | 5.08e-01 | 76.3% | 59.3% |
| 3066474 | 1.1.17.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 | 0.78 | 63.0 | 4.83e-01 | 85.6% | 90.9% |
| 4221728 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.74 | 57.0 | 4.26e-01 | 80.4% | 83.0% |
| 3909175 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.74 | 59.0 | 4.17e-01 | 85.6% | 89.8% |
| 3276425 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.73 | 64.0 | 4.51e-01 | 94.8% | 91.3% |
| 3454710 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.73 | 59.0 | 4.46e-01 | 85.6% | 91.8% |
| 4028467 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.72 | 61.0 | 4.35e-01 | 90.7% | 72.7% |
| 3650249 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.71 | 62.0 | 4.52e-01 | 92.8% | 91.0% |
| 3421481 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.71 | 64.0 | 4.55e-01 | 96.9% | 87.4% |
| 134018 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.71 | 59.0 | 4.88e-01 | 88.7% | 93.8% |
| 5063379 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.70 | 58.0 | 4.70e-01 | 88.7% | 96.7% |
| 3448106 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.70 | 58.0 | 4.24e-01 | 88.7% | 88.4% |
| 3545090 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.69 | 59.0 | 4.51e-01 | 93.8% | 90.0% |
| 3867774 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.68 | 59.0 | 3.71e-01 | 94.8% | 39.8% |
| 3772106 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.68 | 59.0 | 4.49e-01 | 94.8% | 91.1% |
| 4587424 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.68 | 58.0 | 4.40e-01 | 91.8% | 95.9% |
| 3416144 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.68 | 56.0 | 4.33e-01 | 88.7% | 91.9% |
| 3404225 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.68 | 58.0 | 4.50e-01 | 92.8% | 94.8% |
| 4338510 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.64 | 58.0 | 4.42e-01 | 97.9% | 58.1% |
| 3435448 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.64 | 58.0 | 4.28e-01 | 97.9% | 69.7% |
| 3781873 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.63 | 43.0 | 4.21e-01 | 71.1% | 100.0% |
| 2779726 | 1.1.17.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 | 0.62 | 57.0 | 4.51e-01 | 97.9% | 63.4% |
| 3241531 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.62 | 45.0 | 3.59e-01 | 76.3% | 67.8% |
| 3234165 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.62 | 45.0 | 3.06e-01 | 76.3% | 37.1% |
| 1161323 | 1.1.5.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S29 | 0.62 | 51.0 | 4.13e-01 | 88.7% | 84.5% |
| 4852372 | 1.1.5.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 | 0.61 | 56.0 | 4.43e-01 | 100.0% | 92.7% |
| 1099000 | 1.1.5.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 | 0.61 | 54.0 | 4.31e-01 | 95.9% | 91.4% |
| 138821 | 1.11.1.1 ↗ | beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 | 0.60 | 43.0 | 4.07e-01 | 76.3% | 84.2% |
| 4373808 | 1.11.1.1 ↗ | beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 | 0.59 | 42.0 | 4.09e-01 | 74.2% | 98.2% |
| 3173120 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.57 | 41.0 | 2.84e-01 | 78.4% | 65.4% |
| 4502887 | 1.11.1.1 ↗ | beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 | 0.56 | 40.0 | 3.97e-01 | 76.3% | 99.0% |
| 5082315 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.54 | 39.0 | 3.57e-01 | 75.3% | 93.1% |
| 4614564 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 48.0 | 3.86e-01 | 100.0% | 62.6% |
| 3508541 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.53 | 38.0 | 3.53e-01 | 75.3% | 93.1% |
| 3399872 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.53 | 39.0 | 3.19e-01 | 79.4% | 81.5% |
| 3986771 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.53 | 38.0 | 3.50e-01 | 75.3% | 92.3% |
| 3588764 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.51 | 37.0 | 3.46e-01 | 75.3% | 96.7% |
D2
high
residues 91-171
Domain cluster:
rep: hypothetical_protein_1__YP_009336741__Shahe_picorna-like_virus_12__1923442__D757-836
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00548.27 best | Peptidase_C3 | 25.0 | 2.30e-05 | 81.5% | 15.1% |