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NIa-Pro_protein

Euk-Vir

Pokeweed_mosaic_virus

NIa-Pro_protein__YP_008719795__Pokeweed_mosaic_virus__1220025

Identity

Accession:
YP_008719795 ↗
Protein ID:
NIa-Pro_protein
Kingdom:
euk

Quality

84.8 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Pokeweed_mosaic_virus

TaxID: 1220025

Cluster

View cluster (187 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-99_188-235
PDB
Domain cluster: rep: NIa-VPg-Pro_protein__YP_002956094__Triticum_mosaic_virus__431317__D201-288_375-394
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00863.26 best Peptidase_C4 71.2 1.10e-19 70.8% 40.6%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.74 53.0 4.68e-01 72.8% 98.5%
5y2dA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 49.0 5.44e-01 74.1% 97.5%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 32.0 4.11e-01 73.5% 77.6%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 47.0 4.06e-01 82.3% 87.2%
5irbA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 28.0 3.34e-01 71.4% 65.4%
3v76A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 29.0 3.57e-01 72.8% 76.7%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 29.0 3.29e-01 71.4% 67.3%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.58e-01 85.0% 54.9%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 39.0 3.50e-01 85.7% 54.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
257 1.1.5.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C4 0.90 77.0 6.55e-01 87.8% 98.2%
3530898 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.75 54.0 4.30e-01 73.5% 93.6%
3501379 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 52.0 4.14e-01 70.7% 94.1%
3506893 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 52.0 4.04e-01 70.7% 98.3%
3516834 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 51.0 4.00e-01 70.7% 98.3%
3509896 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.72 51.0 4.13e-01 72.1% 95.9%
4205419 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.72 50.0 4.24e-01 70.7% 91.7%
3505198 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 48.0 4.39e-01 70.1% 96.9%
3421481 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.68 57.0 4.57e-01 87.8% 93.7%
3962625 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.67 41.0 5.22e-01 85.7% 100.0%
3284072 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.65 54.0 4.55e-01 87.8% 78.2%
4194689 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.65 54.0 3.88e-01 87.1% 77.6%
4052310 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.65 55.0 4.05e-01 89.8% 84.7%
3415399 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.63 50.0 4.41e-01 83.7% 99.5%
3448106 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.61 53.0 4.39e-01 91.8% 60.8%
3506886 1.1.13.58 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Trypsin 0.61 48.0 4.29e-01 81.6% 93.5%
5072499 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.61 51.0 4.58e-01 88.4% 87.5%
3503641 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 47.0 4.33e-01 81.0% 95.1%
5051302 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 49.0 4.17e-01 85.0% 83.6%
3574288 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 48.0 3.90e-01 85.7% 85.4%
3625701 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.60 48.0 3.94e-01 85.0% 87.5%
3405652 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 50.0 4.13e-01 87.8% 87.3%
3506871 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 47.0 3.25e-01 83.7% 79.4%
2429452 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.56 36.0 3.82e-01 74.1% 72.7%
2095485 1.1.5.38 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C107 0.52 44.0 3.93e-01 89.8% 97.6%
3208741 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 39.0 3.01e-01 78.9% 45.5%
D2 medium residues 100-187
PDB
Domain cluster: rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00863.26 best Peptidase_C4 63.4 2.70e-17 100.0% 38.9%