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NIa-VPg_protein

Euk-Vir

Barley_mild_mosaic_virus

NIa-VPg_protein__NP_734297__Barley_mild_mosaic_virus__12466

Identity

Accession:
NP_734297 ↗
Protein ID:
NIa-VPg_protein
Kingdom:
euk

Quality

74.5 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Bymovirus› Barley_mild_mosaic_virus

TaxID: 12466

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-172
PDB
Domain cluster: rep: NIa-VPg__YP_010088104__Passiflora_edulis_symptomless_virus__2294149__D66-176
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 35.0 3.58e-01 81.9% 53.8%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.59 34.0 3.88e-01 100.0% 75.3%
4r1kB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 37.0 3.42e-01 96.2% 50.0%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 35.0 3.15e-01 98.1% 45.1%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 34.0 2.91e-01 99.0% 39.8%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.53 31.0 3.11e-01 99.0% 54.2%
2q7aA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.37e-01 85.7% 52.6%
4hsrB01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 42.0 3.08e-01 93.3% 94.2%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.51 36.0 3.18e-01 100.0% 47.8%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.50 30.0 3.34e-01 98.1% 77.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258614 12.3.1.40 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › TREH_N 0.62 34.0 2.80e-01 97.1% 30.8%
4944879 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 32.0 3.53e-01 75.2% 60.0%
4944138 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 32.0 3.21e-01 75.2% 48.6%
3673438 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.59 51.0 3.70e-01 98.1% 87.1%
3985763 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.58 40.0 3.21e-01 82.9% 36.1%
3280174 223.5.1.0 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.58 33.0 3.66e-01 100.0% 69.4%
5049721 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 50.0 4.72e-01 99.0% 79.2%
5047765 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 50.0 4.76e-01 98.1% 92.8%
3315008 5.1.4.151 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.55 48.0 3.09e-01 97.1% 26.4%
4611007 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 34.0 3.35e-01 93.3% 58.8%
3511988 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.53 34.0 3.72e-01 96.2% 76.7%
3691594 1.1.5.36 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.53 47.0 3.92e-01 98.1% 79.5%
3813186 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 3.08e-01 98.1% 36.2%
3339476 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.53 41.0 3.46e-01 96.2% 48.9%
4962934 331.2.1.15 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845 0.52 38.0 3.38e-01 77.1% 71.2%
5004308 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.51 45.0 4.00e-01 99.0% 97.4%
4056826 3816.1.1.1 ↗ beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein › PmrD 0.51 34.0 3.90e-01 100.0% 90.0%
3817498 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.51 40.0 3.47e-01 93.3% 54.4%
3920631 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.94e-01 99.0% 40.2%
3265666 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.84e-01 98.1% 41.3%
3394732 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 29.0 3.11e-01 77.1% 63.3%
3801119 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 44.0 3.20e-01 99.0% 57.1%
3573748 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 3.32e-01 95.2% 54.7%
3554702 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 45.0 2.97e-01 100.0% 42.7%