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NIa-VPg_protein
Euk-VirCucumber_vein_yellowing_virus
NIa-VPg_protein__YP_308883__Cucumber_vein_yellowing_virus__137475
Identity
- Accession:
- YP_308883 ↗
- Protein ID:
- NIa-VPg_protein
- Kingdom:
- euk
Quality
71.5
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Ipomovirus›
Cucumber_vein_yellowing_virus
TaxID: 137475
Cluster
View cluster (80 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-52
Domain cluster:
rep: VPg__YP_007032443__Cassava_brown_streak_virus__137758__D5-52
D2
high
residues 74-174
Domain cluster:
rep: NIa-VPg__YP_010088104__Passiflora_edulis_symptomless_virus__2294149__D66-176
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w1nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 42.0 | 4.66e-01 | 88.1% | 79.3% |
| 2iqgA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.61 | 54.0 | 4.19e-01 | 100.0% | 77.9% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.60 | 37.0 | 3.15e-01 | 99.0% | 36.0% |
| 2cspA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 42.0 | 4.29e-01 | 88.1% | 76.5% |
| 2re7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 48.0 | 4.38e-01 | 99.0% | 90.9% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 47.0 | 4.27e-01 | 100.0% | 85.9% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 46.0 | 3.82e-01 | 100.0% | 80.6% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 47.0 | 4.20e-01 | 100.0% | 93.7% |
| 2i02A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 46.0 | 4.17e-01 | 100.0% | 87.1% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 43.0 | 3.14e-01 | 96.0% | 84.8% |
| 2ou5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 46.0 | 3.82e-01 | 100.0% | 90.3% |
| 2uvfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 41.0 | 3.96e-01 | 88.1% | 78.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3481359 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 43.0 | 4.35e-01 | 100.0% | 74.0% |
| 3290861 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.55 | 48.0 | 4.42e-01 | 100.0% | 73.8% |
| 3768026 | 109.4.1.3452 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Beta-prop_ELP1_2nd | 0.55 | 36.0 | 2.63e-01 | 100.0% | 24.4% |
| 3286318 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.55 | 49.0 | 4.13e-01 | 100.0% | 67.1% |
| 3702319 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.54 | 36.0 | 3.91e-01 | 100.0% | 82.4% |
| 5018703 | 815.1.1.0 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 | 0.52 | 43.0 | 4.48e-01 | 93.1% | 100.0% |
| 1481478 | 6127.1.1.2 ↗ | beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › PfEMP1_CIDRalpha1_dom | 0.51 | 34.0 | 3.96e-01 | 96.0% | 95.8% |
| 3213645 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.51 | 37.0 | 2.84e-01 | 77.2% | 62.8% |
| 3586332 | 210.2.1.3 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 | 0.50 | 43.0 | 3.12e-01 | 100.0% | 96.8% |