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NIb

Euk-Vir

Squash_vein_yellowing_virus

NIb__YP_001789000__Squash_vein_yellowing_virus__397544

Identity

Accession:
YP_001789000 ↗
Protein ID:
NIb
Kingdom:
euk

Quality

90.6 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Ipomovirus› Squash_vein_yellowing_virus

TaxID: 397544

Cluster

View cluster (450 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 406-491
PDB
Domain cluster: rep: NIb__YP_007032445__Cassava_brown_streak_virus__137758__D405-481
D2 medium residues 11-45_59-207_260-305
PDB
Domain cluster: rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00680.26 best RdRP_1 46.3 3.80e-12 78.7% 24.0%
D3 medium residues 208-259_306-405
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00680.26 best RdRP_1 57.0 2.10e-15 65.1% 23.3%
PF00680.26 RdRP_1 42.6 5.00e-11 35.5% 11.8%