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NIb
Euk-VirPanax_virus_Y
NIb__YP_003725727__Panax_virus_Y__796352
Identity
- Accession:
- YP_003725727 ↗
- Protein ID:
- NIb
- Kingdom:
- euk
Quality
91.8
mean pLDDT
Taxonomy
TaxID: 796352
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-80_166-195
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 30.5 | 2.20e-07 | 30.9% | 7.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2541763 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.72 | 61.0 | 4.11e-01 | 89.1% | 48.3% |
| None | — | 0.69 | 58.0 | 3.95e-01 | 89.1% | 49.5% | |
| 1875037 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.69 | 65.0 | 4.33e-01 | 100.0% | 49.4% |
| 1173784 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.69 | 58.0 | 3.94e-01 | 89.1% | 49.1% |
| 5367 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.69 | 58.0 | 3.89e-01 | 89.1% | 49.2% |
D2
medium
residues 81-113_218-251_310-411
Domain cluster:
rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 72.5 | 4.10e-20 | 63.9% | 25.1% |
D3
medium
residues 114-165
Domain cluster:
rep: NIb__YP_004564597__Hardenbergia_mosaic_virus__409486__D110-163
D4
medium
residues 196-217_252-309
Domain cluster:
rep: NIb__YP_010088127__Dendrobium_chlorotic_mosaic_virus__2562807__D81-113_256-322
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 36.1 | 4.70e-09 | 76.2% | 12.7% |
D5
medium
residues 412-508
Domain cluster:
rep: NIb__YP_007032445__Cassava_brown_streak_virus__137758__D405-481
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 27.0 | 2.60e-06 | 49.5% | 10.4% |