NIb

Euk-Vir

Hardenbergia_mosaic_virus

NIb__YP_004564597__Hardenbergia_mosaic_virus__409486

Identity

91.3 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Hardenbergia_mosaic_virus

TaxID: 409486

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-96_164-222_276-311

PDB

Domain cluster: rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	56.6	2.80e-15	53.9%	15.3%

D2 medium residues 97-109_223-275_312-401

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	46.8	2.60e-12	57.0%	21.1%
PF00680.26	RdRP_1	38.7	7.60e-10	43.0%	14.0%

D3 medium residues 110-163

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2mh3A00	4.10.280.10	Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain	0.65	49.0	4.51e-01	92.6%	62.9%
3ibtA02	1.10.210.20	Mainly Alpha › Orthogonal Bundle › Uteroglobin ›	0.63	54.0	5.04e-01	98.1%	92.8%
4cfsA02	1.10.210.20	Mainly Alpha › Orthogonal Bundle › Uteroglobin ›	0.60	52.0	4.79e-01	98.1%	91.4%
3iq2A00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.52	45.0	3.49e-01	98.1%	78.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5067501	3016.1.1.5 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SHMT	0.58	46.0	3.66e-01	90.7%	83.3%

D4 medium residues 402-505

PDB

Domain cluster: rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488