NIb

Euk-Vir

Caladenia_virus_A

NIb__YP_006666646__Caladenia_virus_A__1198147

Identity

89.9 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Poacevirus› Caladenia_virus_A

TaxID: 1198147

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 403-477

PDB

Domain cluster: rep: NIb__YP_007032445__Cassava_brown_streak_virus__137758__D405-481

D2 medium residues 18-109_164-186_253-304

PDB

Domain cluster: rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312

D3 medium residues 110-163_187-216

PDB

Domain cluster: rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4p32B00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.58	44.0	3.28e-01	82.1%	84.3%
3lcvB01	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.57	33.0	3.83e-01	75.0%	82.5%
3k62A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.57	42.0	2.78e-01	81.0%	49.3%
4hluD00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	44.0	3.20e-01	85.7%	77.6%
3zheA02	1.25.40.760	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.54	40.0	3.04e-01	79.8%	72.9%
3t0yA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.54	34.0	3.84e-01	75.0%	83.3%
4huqA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	41.0	2.93e-01	84.5%	70.1%
2blfB01	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.50	31.0	3.44e-01	81.0%	81.0%
1kblA04	3.20.20.60	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains	0.50	35.0	2.34e-01	73.8%	83.6%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5366	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.68	60.0	3.90e-01	100.0%	59.8%
3579615	103.1.1.3 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N	0.56	35.0	3.54e-01	97.6%	61.2%
3428929	101.1.1.138 ↗	alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD	0.55	40.0	3.82e-01	84.5%	65.0%
3627865	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.53	34.0	3.63e-01	71.4%	73.3%
3387512	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.52	37.0	3.38e-01	100.0%	53.3%
3935349	108.1.1.14 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF_assoc_2	0.51	43.0	4.00e-01	96.4%	96.4%
4012006	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.51	35.0	3.58e-01	71.4%	71.8%
3395675	223.2.1.20 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1	0.50	42.0	3.58e-01	100.0%	96.8%

D4 medium residues 217-252_305-402

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	43.6	2.50e-11	73.1%	22.7%